PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913846.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 237aa    MW: 26702.1 Da    PI: 7.7365
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913846.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1992146256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeql+ Le+ F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  XP_010913846.1  92 RKKLRLTKEQLTLLENSFQEHNTLNSTQKQALADQLNLRSRQVEVWFQNRRARTK 146
                     678899***********************************************98 PP
2HD-ZIP_I/II117.76.4e-3892180189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq++lLE+sF+e+++L++++K++la +L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL++e eeL++
  XP_010913846.1  92 RKKLRLTKEQLTLLENSFQEHNTLNSTQKQALADQLNLRSRQVEVWFQNRRARTKLKQTEVDCEFLKKCCENLSNENRRLKRELEELKS 180
                     69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1981149IPR009057Homeodomain-like
PROSITE profilePS5007117.52488148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.4E-1988151IPR009057Homeodomain-like
SMARTSM003891.0E-1590152IPR001356Homeobox domain
CDDcd000861.42E-1492149No hitNo description
PfamPF000466.6E-1792146IPR001356Homeobox domain
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PfamPF021833.3E-10148182IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.7E-19148191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEGDECNISL GLAIGGGGLF SSNQSRNNGR KPPVQFHVLF PPQPKGEEEE EEPITEEQHV  60
NKSRSRSKNI DEEEDTSTKD MSDGVSNQVG MRKKLRLTKE QLTLLENSFQ EHNTLNSTQK  120
QALADQLNLR SRQVEVWFQN RRARTKLKQT EVDCEFLKKC CENLSNENRR LKRELEELKS  180
MKPGCPFYVG IPKVATLNLC PSCERTVAAG SEKGNGDLDA MKSQRVPLKN GLVGLQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913846.11e-174homeobox-leucine zipper protein HAT9-like
SwissprotP466652e-52HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A3Q0I4S71e-107A0A3Q0I4S7_PHODC; homeobox-leucine zipper protein HAT9-like
STRINGXP_008789723.11e-103(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-43homeobox from Arabidopsis thaliana