PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010913912.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 442aa MW: 49113.7 Da PI: 6.7483

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010913912.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.3	1.5e-32	264	318	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtp+LHerFve+v++LGG+ekAtPk il+lm+ +gLt++hvkSHLQkYR+ XP_010913912.1 264 KTRIRWTPDLHERFVECVNRLGGAEKATPKGILNLMNSDGLTIYHVKSHLQKYRI 318 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.597	261	321	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-17	262	319	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-30	263	319	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-24	264	319	IPR006447	Myb domain, plants
Pfam	PF00249	5.9E-9	268	317	IPR001005	SANT/Myb domain
Pfam	PF14379	2.6E-20	348	394	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MDIQRINFHH RKDDSLNSSS FELPNPSCGN FSSQQAFNTG FPFQTSLLDC SPRHYAATSS 60 DMSLPSERGS PQPGFVYPNR SAIAPNCVGS TPSAFYAAER LMGFPPLEHH FGTPPMLSKL 120 PGIHLEASTN SPSESYIWVD TGKQSDFGPK SRDALESVAK FPLQENITSG FSDNTKRFPC 180 GDHQEIELQS LLQSNQSNGY STLDSRHSYS PRGIHDPCVG YNLSNASVGK PSFQSATRKQ 240 LAKTSVGLPA TPTGTSSGTS VPNKTRIRWT PDLHERFVEC VNRLGGAEKA TPKGILNLMN 300 SDGLTIYHVK SHLQKYRIAK HMPESSEGKF EKRASVNDMR QLDPKTGMQI TEALQLQLDV 360 QRCLHEQLEI QRNLQLRIEA QSRKLKQMFE QQLKANANLT ESQNLEDLFP DEQPLSLDDD 420 DNVQILNVED GSQNTNFPSK IS

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MDIQRINFHH RKDDSLNSSS FELPNPSCGN FSSQQAFNTG FPFQTSLLDC SPRHYAATSS  60
DMSLPSERGS PQPGFVYPNR SAIAPNCVGS TPSAFYAAER LMGFPPLEHH FGTPPMLSKL  120
PGIHLEASTN SPSESYIWVD TGKQSDFGPK SRDALESVAK FPLQENITSG FSDNTKRFPC  180
GDHQEIELQS LLQSNQSNGY STLDSRHSYS PRGIHDPCVG YNLSNASVGK PSFQSATRKQ  240
LAKTSVGLPA TPTGTSSGTS VPNKTRIRWT PDLHERFVEC VNRLGGAEKA TPKGILNLMN  300
SDGLTIYHVK SHLQKYRIAK HMPESSEGKF EKRASVNDMR QLDPKTGMQI TEALQLQLDV  360
QRCLHEQLEI QRNLQLRIEA QSRKLKQMFE QQLKANANLT ESQNLEDLFP DEQPLSLDDD  420
DNVQILNVED GSQNTNFPSK IS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-24	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-24	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-24	264	321	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-24	264	321	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-24	264	321	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-24	264	321	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-24	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-24	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-24	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-24	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-24	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-24	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019703680.1	0.0	myb family transcription factor PHL5
Refseq	XP_019703681.1	0.0	myb family transcription factor PHL5
Refseq	XP_029118670.1	0.0	myb family transcription factor PHL5
Swissprot	Q0WVU3	4e-68	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A3Q0I272	0.0	A0A3Q0I272_PHODC; myb family transcription factor PHL5-like isoform X1
STRING	XP_008787370.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6933	37	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-69	G2-like family protein