PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913913.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 367aa    MW: 39442.9 Da    PI: 8.6489
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913913.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.15.3e-4373148176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     +CqvegC++dl+ ak y++rhkvC +hsk p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  XP_010913913.1  73 RCQVEGCKVDLTGAKAYYSRHKVCGMHSKFPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 148
                     6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3467135IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.21471148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.81E-4172152IPR004333Transcription factor, SBP-box
PfamPF031101.9E-3274147IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MERGSSFLAV SGTNGSDDSV HGLQFGKKVY FEDGVGGGSS SKASPTTAAS LASPPPPPKK  60
GKGVVQGRQQ PPRCQVEGCK VDLTGAKAYY SRHKVCGMHS KFPKVIVAGL EQRFCQQCSR  120
FHQLPEFDQG KRSCRRRLAG HNERRRKPPP GSLSSRIGRL SSSFHEDNRS FRGFLMDFTH  180
PRLPETAREV WPTVQAVDRV SSHQWQGSLG APQPSEIAPH GARQYMHDSI GGALLSTPEI  240
PASGCLSGSS DSSCALSLLS TLPWGSTATR NDQAPTITAS SSFSGAPMDQ PVLSNNYVAS  300
SWGFKSHEGG SSSLGVQHEL GLGQVTQLDS SQFSGELELA LQGSRQCMDF DPSRAYGHSD  360
DVIHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-30741471184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913913.10.0squamosa promoter-binding-like protein 17
SwissprotA3C0572e-91SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A2H3XF460.0A0A2H3XF46_PHODC; squamosa promoter-binding-like protein 17
STRINGXP_008782879.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-46squamosa promoter binding protein-like 9