PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913954.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 356aa    MW: 39485.8 Da    PI: 6.1288
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913954.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.92e-28125185158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     ldDgy+WrKYGqKe+ g+++pr+YYrCt++   gCp++k+v+rs+e+p v+++tY+g+H++
  XP_010913954.1 125 LDDGYSWRKYGQKEILGAKHPRGYYRCTHRntqGCPATKQVQRSDENPLVFDVTYHGSHTC 185
                     59***************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.951120183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-28122186IPR003657WRKY domain
SuperFamilySSF1182901.31E-25124185IPR003657WRKY domain
SMARTSM007743.1E-42125187IPR003657WRKY domain
PfamPF031061.6E-27126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MENGTGSNQS LLVTELTQLQ ELARQLEVHL NQPGPNEFCK SLAAKMLSSI DKSICMAKIS  60
DSEGQQQQLA GTDSPHSATE SPHSENSNQA FRDYDRKEMS KKRKTLPKWT SHIKVCPGEG  120
VEGPLDDGYS WRKYGQKEIL GAKHPRGYYR CTHRNTQGCP ATKQVQRSDE NPLVFDVTYH  180
GSHTCLQRSQ AVPRSASREQ ELKQNKPNSQ EHSQQQDHNL LLTFQRGLKV ITQGLDSEAQ  240
DQKSLSFSFP STPVSAVKAE NHIFSCPPTL DSGFMGSFSS SFLSQTTSES NYFSVSPCSM  300
SNYGGGLNLQ TAESDLTEIM SAATSATNSP LMDMDFMLEP LEFDPKFQLD VSSFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20125185868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913954.10.0probable WRKY transcription factor 53
TrEMBLA0A2H3WYD80.0A0A2H3WYD8_PHODC; probable WRKY transcription factor 41
STRINGXP_008775571.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.17e-48WRKY family protein