PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010913983.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 433aa MW: 47947 Da PI: 6.9513

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010913983.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	393.3	2.7e-120	43	432	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++l+++cAe ++ gd + a+++ + ls asp+gd+ Rla+ f++AL+ rla+ p+ + + ++s+ +++ +++v+P+l+f+hl XP_010913983.1 43 RQLVISCAELIHRGDISTARRTASLLSAAASPHGDSADRLAHQFARALSLRLAS-------PSPSVPFD-TSSEALQSSYLSLNQVTPFLRFAHL 129 7899***********************************************9.......22222222.224455566667********* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl........ 181 taNqaIl+a++g++r+Hi+D+d s+G+QWp+Llqa+a+R+ egpps+RiTg g + + l++tg+rL+ fA++lg++f+f++l XP_010913983.1 130 TANQAILDALHGCRRIHILDLDTSHGVQWPPLLQAIADRSyaEGPPSIRITGTGT----DLDVLRRTGDRLQTFAHSLGLQFQFHPLllpissts 220 ************************************999********....************************999999 PP GRAS 182 ..............vak...rledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFler 256 + ++l+ ++++++pgE+laVn+vl lh+ll++s + ++ e +++L++vk ++P vv+v+e+ea+hns++Fl+r XP_010913983.1 221 pgsststsiplittA-AgggGSSNLTSSSFQLHPGETLAVNCVLFLHKLLKDSRHEDDgsrELRAFLQAVKAMNPVVVTVAEREASHNSPNFLQR 314 998888777776531.11234567799999******************99988887777889*************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 ++eal+yy+++f+slea+lp++s+er vE+++lgrei+++va eg+ rrerhe++e+W+ +++aGF+++pls +a +qaklllr ++ s+gy+ XP_010913983.1 315 LMEALDYYTVVFESLEATLPPKSQERLAVEQVWLGREIEDIVAREGEGRRERHERFERWEGLMRDAGFSNLPLSPFALSQAKLLLRLHYpSEGYQ 409 ******************************************************************************************* PP GRAS 351 veeesgslvlgWkdrpLvsvSaW 373 +e ++s++lgW++++L+svS+W XP_010913983.1 410 LEMVRDSIFLGWQNKALFSVSSW 432 ********************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.429	16	412	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.4E-118	43	432	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MLGSLKSHEE GEQDPDHHNH HHRSHPHHPN PPHAFLSLSA HARQLVISCA ELIHRGDIST 60 ARRTASLLSA AASPHGDSAD RLAHQFARAL SLRLASPSPS VPFDTSSEAL QSSYLSLNQV 120 TPFLRFAHLT ANQAILDALH GCRRIHILDL DTSHGVQWPP LLQAIADRSY AEGPPSIRIT 180 GTGTDLDVLR RTGDRLQTFA HSLGLQFQFH PLLLPISSTS PGSSTSTSIP LITTAAGGGG 240 SSNLTSSSFQ LHPGETLAVN CVLFLHKLLK DSRHEDDGSR ELRAFLQAVK AMNPVVVTVA 300 EREASHNSPN FLQRLMEALD YYTVVFESLE ATLPPKSQER LAVEQVWLGR EIEDIVAREG 360 EGRRERHERF ERWEGLMRDA GFSNLPLSPF ALSQAKLLLR LHYPSEGYQL EMVRDSIFLG 420 WQNKALFSVS SWH

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MLGSLKSHEE GEQDPDHHNH HHRSHPHHPN PPHAFLSLSA HARQLVISCA ELIHRGDIST  60
ARRTASLLSA AASPHGDSAD RLAHQFARAL SLRLASPSPS VPFDTSSEAL QSSYLSLNQV  120
TPFLRFAHLT ANQAILDALH GCRRIHILDL DTSHGVQWPP LLQAIADRSY AEGPPSIRIT  180
GTGTDLDVLR RTGDRLQTFA HSLGLQFQFH PLLLPISSTS PGSSTSTSIP LITTAAGGGG  240
SSNLTSSSFQ LHPGETLAVN CVLFLHKLLK DSRHEDDGSR ELRAFLQAVK AMNPVVVTVA  300
EREASHNSPN FLQRLMEALD YYTVVFESLE ATLPPKSQER LAVEQVWLGR EIEDIVAREG  360
EGRRERHERF ERWEGLMRDA GFSNLPLSPF ALSQAKLLLR LHYPSEGYQL EMVRDSIFLG  420
WQNKALFSVS SWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-60	39	433	1	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029117937.1	0.0	protein MONOCULM 1
Swissprot	Q9ZWC5	1e-115	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A3Q0IBK3	0.0	A0A3Q0IBK3_PHODC; protein MONOCULM 1-like
STRING	XP_008798776.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	2e-97	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]