PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914215.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25774.3 Da    PI: 7.8562
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914215.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53.1e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvtfskRr g+lKKA+EL +LCd++v v+ifss+gk++eyss
  XP_010914215.1  9 KRIENPTNRQVTFSKRRGGLLKKANELAILCDVQVGVVIFSSSGKMFEYSS 59
                    79***********************************************96 PP
2K-box66.59.2e-23801522698
           K-box  26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +ei+n q + R++ GedL+s+++++L+qLeqqLe s++k+R++K++ll +q+++l++ke+ l+++n  L + l
  XP_010914215.1  80 EEIDNQQASMRQYTGEDLSSMTMNDLNQLEQQLEYSVNKVRTRKHQLLNQQLDNLRRKEHILEDQNSHLYRIL 152
                     789999*************************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.637161IPR002100Transcription factor, MADS-box
CDDcd002653.49E-44272No hitNo description
SuperFamilySSF554554.97E-33279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.668158IPR002487Transcription factor, K-box
PfamPF014868.3E-2380150IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKIEIKR IENPTNRQVT FSKRRGGLLK KANELAILCD VQVGVVIFSS SGKMFEYSSP  60
PLSMHQIIDR YQRVTNTRFE EIDNQQASMR QYTGEDLSSM TMNDLNQLEQ QLEYSVNKVR  120
TRKHQLLNQQ LDNLRRKEHI LEDQNSHLYR ILSEHQAAME HQQAAMEHKV PDVPMLEPFG  180
LFYQDEPSRN LLQLSPQLHA FRLQPAQPNL QEASLPGHSL QL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19171169MEF2 CHIMERA
6byy_B2e-19171169MEF2 CHIMERA
6byy_C2e-19171169MEF2 CHIMERA
6byy_D2e-19171169MEF2 CHIMERA
6bz1_A2e-19171169MEF2 CHIMERA
6bz1_B2e-19171169MEF2 CHIMERA
6bz1_C2e-19171169MEF2 CHIMERA
6bz1_D2e-19171169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914215.11e-164MADS-box transcription factor 29 isoform X3
SwissprotQ6H7119e-93MAD29_ORYSJ; MADS-box transcription factor 29
TrEMBLA0A2H3Z3T11e-148A0A2H3Z3T1_PHODC; MADS-box protein AeAP3-2-like
STRINGXP_008807981.11e-149(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.27e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li M,Sun P,Zhou H,Chen S,Yu S
    Identification of quantitative trait loci associated with germination using chromosome segment substitution lines of rice (Oryza sativa L.).
    Theor. Appl. Genet., 2011. 123(3): p. 411-20
    [PMID:21512773]
  3. Yin LL,Xue HW
    The MADS29 transcription factor regulates the degradation of the nucellus and the nucellar projection during rice seed development.
    Plant Cell, 2012. 24(3): p. 1049-65
    [PMID:22408076]
  4. Yang X, et al.
    Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa).
    PLoS ONE, 2012. 7(12): p. e51435
    [PMID:23251532]
  5. Nayar S,Sharma R,Tyagi AK,Kapoor S
    Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis.
    J. Exp. Bot., 2013. 64(14): p. 4239-53
    [PMID:23929654]
  6. Nayar S,Kapoor M,Kapoor S
    Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
    J. Exp. Bot., 2014. 65(18): p. 5339-50
    [PMID:25096923]
  7. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]