PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914365.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 641aa    MW: 70854 Da    PI: 6.0763
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914365.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.92.1e-36139215177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv+gCead+ e+k yh+rh+vC  ++ ap+v+++g+ +r+CqqC++fh l++fDe+krsCrr+L++hn+rrr++ 
  XP_010914365.1 139 RCQVPGCEADIGELKGYHQRHRVCLRCAYAPSVVLDGEPKRYCQQCGKFHILTDFDEGKRSCRRKLERHNKRRRRRP 215
                     6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.9E-29136201IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.368137214IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-34138218IPR004333Transcription factor, SBP-box
PfamPF031101.3E-27140213IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MENSDGVAGE GAEPGPAVTT TVTAALEWGG LLDFTIYDDG PLFLPWDGLE DRPQDDAAAA  60
APPPLPPPRA AGSVDRVRKR DVRLVCSNYL EGRIPCSCPE AEEAAGDEGE GAEVAVPGVE  120
SSKGKKRART GGPSIGPLRC QVPGCEADIG ELKGYHQRHR VCLRCAYAPS VVLDGEPKRY  180
CQQCGKFHIL TDFDEGKRSC RRKLERHNKR RRRRPTDLIN IVEEDKEHQG DISVDDNCAG  240
KPRKETIDGF ACGTVETAVS NKLRERETLL ESEDGHGSPF HSLSSFNNVH SNSIMSFTTS  300
DEAQIDEKID NSQSGLSTFC DNKSGYSSVC PTGRISFKLY DWNPADFPRR LRHQIFQWLA  360
SMPVELEGYI RPGCTMLTVF IAMPHFMWEK LSQDAAGYVK DLVCAPESLF LGRGNIHIYL  420
NNNIIQVLED ATLLNSIRME VQVPRLHYVF PTFFEAGKPM EFIACGSYLD QPKFRFLVSF  480
AGKYLSLESC HAMCHKKISE CSGNGVGSIS STEHEVFRIN ITQTDSEIFG PAFIESMERR  540
DKDGSGSTTT PATQANDETV PLLTRDGISG QICRLNSGTR WTSESWGIFP STRTSIRAAL  600
FITGSVVLCF VACVALFHPH MAGEFADSLR RLLLTSRKTW N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A6e-40139217583squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196214KRSCRRKLERHNKRRRRRP
2200212RRKLERHNKRRRR
3208213KRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029118752.10.0squamosa promoter-binding-like protein 9 isoform X4
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A2H3ZGT70.0A0A2H3ZGT7_PHODC; squamosa promoter-binding-like protein 9 isoform X1
STRINGXP_008813644.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-130squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]