PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914517.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 153aa    MW: 16581.8 Da    PI: 10.7984
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914517.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA627.2e-202761135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  XP_010914517.1 27 CADCRTTKTPLWRGGPSGPKSLCNACGIRYRKNRR 61
                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.47E-132061No hitNo description
PROSITE profilePS5011413.0862159IPR000679Zinc finger, GATA-type
SMARTSM004015.4E-172181IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-162661IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.94E-142675No hitNo description
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
PfamPF003201.4E-172761IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDLLGEKETG SIDLSSGRES SGELKSCADC RTTKTPLWRG GPSGPKSLCN ACGIRYRKNR  60
RAALGHKEGE RRERKQKRED DGGSGSGSSS SSSRTTTTTK ELGGVSVKLR MLGLGSEVLV  120
KRRSTLERKR RRMGEVEQAA VLLMALSSGF LYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127131RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914517.11e-103GATA transcription factor 16
TrEMBLA0A2H3YDU72e-78A0A2H3YDU7_PHODC; GATA transcription factor 15-like
STRINGXP_008797161.13e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.19e-27GATA transcription factor 15