PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914593.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 802aa    MW: 90963.4 Da    PI: 6.1538
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914593.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.19.3e-26158244190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn+YAk+ GFsvrk + +++ r+g+i +r++vCs+eg+r+e++++   ++++r+ +rt+C a+++ k ++d++w+v+k+  +HnH+la
  XP_010914593.1 158 DFYNSYAKRKGFSVRKGHLSRR-RDGSIRDRHYVCSNEGFRQEHRTH--ITKKPRPLERTNCLARIEFKVNRDNVWVVNKFIDDHNHPLA 244
                     6*****************9997.9999****************9887..999************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-23158244IPR004330FAR1 DNA binding domain
PfamPF105511.3E-30368461IPR018289MULE transposase domain
PROSITE profilePS509669.953636683IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-4657680IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-6658685IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MSTSNECASE ENAMLKLSPA SKECHDGFET LVINNTNAGD GPAENITVNG SAENINAANG  60
SEENINATDG SAENANATDG SVEDTNATDG SMEEMNVKDG SVKITSVIDG SVKNTSGIGE  120
LVKNTNNLDG SPALDSINAS QLDPKVGMTF HSEDEAYDFY NSYAKRKGFS VRKGHLSRRR  180
DGSIRDRHYV CSNEGFRQEH RTHITKKPRP LERTNCLARI EFKVNRDNVW VVNKFIDDHN  240
HPLASPNKVH MLRSHRKKLP IQRAVFTEAD YYYGVKHSLL HDFESEDLHG TEDTGLLLKN  300
QSNCLSTKRI RDLEKGDAQF LLDFLKAKQS EDPSFFYAVQ LDEKERLTNF FWADARSIID  360
YAYFGDAVLF DTTYRTSRFD IPFAPFIGIN HHKQIVIFGA ALLLDETTES FVWLFKTFLD  420
AMSGKQPKTI FTDWCAAMSK AIAISLPDSC HQLCLWHILQ NVPKHLNSVC SREPNFQKEF  480
ENCIYGGCSE DDFHKRWDNL ISKYGLASNS WLKDLYAVRE KWALAYHSHS FCGTLTTKQR  540
AESMDNLFKI HFYRKLPLSK FIMQYFKALV QLREDELVED YESRQTKPVL LVDIPMLAEA  600
AESYTRMMYM DFEYEYKSQL ACLCEPVGVD GTVYTFKVSV PQKQSSGHVE FNPSNATVTC  660
SCKKFESMGI LCMHALKVLN NNNVLYLPPR YILKRWTKYA KDGPLSDARQ PVVDPGLQES  720
LSHRYSRVCH KAIAVAVKSA LSKDALDILE HGLDRLIAEM ENLLHNASLN EQREDMNVDD  780
NMQQNTLDAS NICFDSFEFT AR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914593.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_019704292.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2H3Z6M60.0A0A2H3Z6M6_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008809265.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-127FAR1-related sequence 5