PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914731.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 231aa    MW: 26861.2 Da    PI: 8.6394
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914731.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF503.7e-161152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i ++  r++++ kR++g+lKK +ELS+LCd++++ ii+ +++
  XP_010914731.1 11 IADDAARKTSLKKRKKGLLKKVQELSILCDVDACAIIYEPDD 52
                    789999********************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.881161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-17160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-20395IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSRSSMKLEL IADDAARKTS LKKRKKGLLK KVQELSILCD VDACAIIYEP DDRHPELWPS  60
SEEATRMLVR LRSMPEMEQK QKMMNQEEFL YQKMRKLVDQ LHKQEFENKE LEKKLKMYEA  120
LRTGDFSELD MEQAMNLSMM IEQMLKKIYE KMDAIKKHQA AMARVDGVVQ EGGNAAGLNT  180
PRENTPTEKD NEILQRQKQM LDMMIPRSSK TYQPSAGPTN PWPANSLFPF N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914731.11e-171agamous-like MADS-box protein AGL80
TrEMBLA0A2H4A1E83e-72A0A2H4A1E8_PHODC; agamous-like MADS-box protein AGL80
STRINGXP_008812533.14e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5075522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-23AGAMOUS-like 80