PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914778.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 102aa    MW: 11452.5 Da    PI: 3.8514
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914778.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-071460447
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     W+ e+ +l+  a +    g   +W+++a+ +g +R+++++ks++  +
   XP_010914778.1 14 WSWEDNKLFELALAVVDEGnpdRWEAVASIIGGKRSAEEVKSHYEVL 60
                     888888888887777777777***********99**********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-51063IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-91268IPR009057Homeodomain-like
CDDcd001671.41E-41461No hitNo description
PfamPF002499.9E-61460IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MEDPDESGNV PSGWSWEDNK LFELALAVVD EGNPDRWEAV ASIIGGKRSA EEVKSHYEVL  60
LEDLDIIESG RLDHAVSAVL NDTQDVCWTD EDQERLAQLN IR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-16141021193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914778.12e-68protein RADIALIS-like 4
SwissprotQ6NNN06e-18RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A3Q0IH792e-60A0A3Q0IH79_PHODC; protein RADIALIS-like 3
STRINGcassava4.1_019843m2e-35(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-19RAD-like 6