PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010914918.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

CPP

Protein Properties

Length: 1077aa MW: 116347 Da PI: 6.6761

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010914918.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.3	4.9e-16	660	699	3	42
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +k+CnCk+skClk+YC+Cfa g++C+e C C++C+N+ e+ XP_010914918.1 660 HKRCNCKRSKCLKLYCDCFAGGTFCTEACACQECFNRPEH 699 689*********************************9875 PP
2	TCR	50.4	4.3e-16	745	784	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks ClkkYCeC++ag+ Cs C+Ce+CkN+ XP_010914918.1 745 RHKRGCNCKKSLCLKKYCECYQAGVGCSFGCRCEGCKNTF 784 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.4E-15	658	699	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.248	659	785	IPR005172	CRC domain
Pfam	PF03638	3.6E-12	661	696	IPR005172	CRC domain
SMART	SM01114	3.2E-17	745	786	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.8E-11	747	783	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1077 aa Download sequence Send to blast
MDSPETTKPA STAAPAVQES PFSSYVSNLS PIPLVNAKPG VPAYGDINFP SPEPVFTSPH 60 ISYPRRLKRS QHLLLNGAEK FPPGYANNAT EMSESAQING PLISMSMVQS GSCTQKEGDN 120 DCPSQDQPCS SPSSCVDAFL ADPLENCDNP SGSPDLYSKQ AAEMPQRIQA DVTSVDEKQI 180 KCSKEDFNQL QPISPSILVK EITADSMDCL TSPALPNPHL EQASDPPRAL LNDFISTEET 240 NPEIYVSDVK KCTITKATKS LGSSYQAEEG PPGEESSFPV AQFESKLKMA NEAKDINERS 300 CDEQPGPVST DAIAVTCSQN GLQSMDQNMA SYPSFGLKDK DCDVVGHNKA SPSTSVMYPH 360 GAQDANKKLA VDGKCAELDS TPQWLPESHE DVQAVDKHLD NPGAICIMFA ENQIPYDLEE 420 GTQHQRGMRK RLQFEAVENR RMSIVSNSES PATPLDMGTI SDSHTESVAN SANSQSVQSV 480 PGNAMCRLPL NDVSGQKKGS SPATAPKPSG IGLHLNSIGS SGPINCDANM HDTNLRGQKS 540 LSGVNSQVLP DLKNDVALTN LKGKNPATLT VTLENNSANG NSDKKHSENQ AIKLPNSSIS 600 YQSPVDARPL QSSLQSKHID HYMTPSNIKR PVSDGASKSL DSTQTSPRKK RKKAPENDGH 660 KRCNCKRSKC LKLYCDCFAG GTFCTEACAC QECFNRPEHE DTVRETRQQI ESRNPLAFAP 720 KVVLQVTNPK KDNGENKDMT PASARHKRGC NCKKSLCLKK YCECYQAGVG CSFGCRCEGC 780 KNTFGRKDVC GEIIEIEHKK SKEGSWESDP SCGKLEGIDL KREPDSTKQC PLHLSPLTPS 840 IQGPSGSDMP KSHCPASYRA SPESSASVLP YYEQCPSSPA DSMSNNASEQ EREKTLSIVL 900 YDQETECPCT GKVDPFSPGW DGFSDICNLS PLPNPKASAS CVSVASKIRK PKILQTKLFQ 960 GSARLSGGSL CWHSSPVTPL PPFGEGKLVV EPDSDGGVHN NREDDTPAIL KDTCTPVKAV 1020 KTSSPKQKRV SPPHRHLHES RSSSSPGLRS ARKFILQSVP SFPPLTPYSN NSRGHGT

Sequence ? help Back to Top

Protein Sequence Length: 1077 aa Download sequence Send to blast

MDSPETTKPA STAAPAVQES PFSSYVSNLS PIPLVNAKPG VPAYGDINFP SPEPVFTSPH  60
ISYPRRLKRS QHLLLNGAEK FPPGYANNAT EMSESAQING PLISMSMVQS GSCTQKEGDN  120
DCPSQDQPCS SPSSCVDAFL ADPLENCDNP SGSPDLYSKQ AAEMPQRIQA DVTSVDEKQI  180
KCSKEDFNQL QPISPSILVK EITADSMDCL TSPALPNPHL EQASDPPRAL LNDFISTEET  240
NPEIYVSDVK KCTITKATKS LGSSYQAEEG PPGEESSFPV AQFESKLKMA NEAKDINERS  300
CDEQPGPVST DAIAVTCSQN GLQSMDQNMA SYPSFGLKDK DCDVVGHNKA SPSTSVMYPH  360
GAQDANKKLA VDGKCAELDS TPQWLPESHE DVQAVDKHLD NPGAICIMFA ENQIPYDLEE  420
GTQHQRGMRK RLQFEAVENR RMSIVSNSES PATPLDMGTI SDSHTESVAN SANSQSVQSV  480
PGNAMCRLPL NDVSGQKKGS SPATAPKPSG IGLHLNSIGS SGPINCDANM HDTNLRGQKS  540
LSGVNSQVLP DLKNDVALTN LKGKNPATLT VTLENNSANG NSDKKHSENQ AIKLPNSSIS  600
YQSPVDARPL QSSLQSKHID HYMTPSNIKR PVSDGASKSL DSTQTSPRKK RKKAPENDGH  660
KRCNCKRSKC LKLYCDCFAG GTFCTEACAC QECFNRPEHE DTVRETRQQI ESRNPLAFAP  720
KVVLQVTNPK KDNGENKDMT PASARHKRGC NCKKSLCLKK YCECYQAGVG CSFGCRCEGC  780
KNTFGRKDVC GEIIEIEHKK SKEGSWESDP SCGKLEGIDL KREPDSTKQC PLHLSPLTPS  840
IQGPSGSDMP KSHCPASYRA SPESSASVLP YYEQCPSSPA DSMSNNASEQ EREKTLSIVL  900
YDQETECPCT GKVDPFSPGW DGFSDICNLS PLPNPKASAS CVSVASKIRK PKILQTKLFQ  960
GSARLSGGSL CWHSSPVTPL PPFGEGKLVV EPDSDGGVHN NREDDTPAIL KDTCTPVKAV  1020
KTSSPKQKRV SPPHRHLHES RSSSSPGLRS ARKFILQSVP SFPPLTPYSN NSRGHGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-19	663	782	14	120	Protein lin-54 homolog
5fd3_B	4e-19	663	782	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	648	652	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010914918.1	0.0	CRC domain-containing protein TSO1 isoform X1
TrEMBL	A0A3Q0I132	0.0	A0A3Q0I132_PHODC; uncharacterized protein LOC103703858
STRING	XP_008785101.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20767	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	5e-61	TESMIN/TSO1-like CXC 2