PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914936.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 712aa    MW: 80974.5 Da    PI: 7.4273
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914936.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.72.3e-2485172289
            FAR1   2 fYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     fYn+YA+++GF  r+ +s++sk  ++  ++++fvCskeg  +++ +++ +++r+r + r gCka+++v ++ +++w+v+kle+ HnH+l
  XP_010914936.1  85 FYNDYARRLGFPFRVGRSRRSKGvEEVLIMKRFVCSKEGIYRKKPSSEGTRKRERISMREGCKAMMEVIRD-SDRWVVSKLETAHNHHL 172
                     9********************761556799*************999999*******************999.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.5E-2185172IPR004330FAR1 DNA binding domain
PfamPF105511.3E-28265356IPR018289MULE transposase domain
PROSITE profilePS5096611.127544580IPR007527Zinc finger, SWIM-type
PfamPF044347.2E-9552579IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-6555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MENTRTEGDD LMEDYVECLM SLDTNTRPGE NDSTILPAPA EEPKSIPVGI TEQPPTKKLA  60
PVSTEEPKEP TLGMEFESDE AAKAFYNDYA RRLGFPFRVG RSRRSKGVEE VLIMKRFVCS  120
KEGIYRKKPS SEGTRKRERI SMREGCKAMM EVIRDSDRWV VSKLETAHNH HLGTCSRVGY  180
LRARGFIDTS EKARIVASDA MTLLRQNAFG EGGDAQGLLD YFKRMQAENP AFFYAIQVDN  240
NSCVTNAFWA DAKARSAYSY FGDAVTFDTT YKKNKYMMPF VTFSGVNHHL QPVIFGCALL  300
IDETEFSFIW LFETWLAAMG GRPPVSLVTD QNRAMTAAIA KVFPNTCHRF CKWLILSRSK  360
QKLAHVYAAH PTLRGELEKC VIESETVQAF EMTWASIIDK YDLRKNTWLQ ALFNIRHRWI  420
PLYLKDTFFA ELSPTQKLET MNDFYKKYFN TKTSLKVFLT QFELAMASRY EDEAQAGADT  480
LCTKPVLKTA SPIEKQAATI YTRAVFNKFQ QEFVESLGYN VYKIKDGTVS KFSVARDEDS  540
LETFLVTYNS AKKTATCTCK NFEFSGILCQ HILGVFLMVD LRMLPEEYFL KRWTRHAKSC  600
VILDEHSVEL QSSSQESITS RYNDLCRDAI KFAEKGATSI EIYKAAKDVL QKAFTDIIAF  660
EKNSGRGALR DVININEEIA IDDAMNGQVL QDSERKVTNL LGQLLGSSWS PV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914936.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_010914937.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_019704364.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_029118924.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2H3Y2800.0A0A2H3Y280_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008792107.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-176FAR1-related sequence 5