PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914954.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 674aa    MW: 77685.8 Da    PI: 7.7605
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914954.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.59.6e-2386176289
            FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     fYn+YA ++GF +r+++s++++r+g    ++++fvC keg+++++ ++ t+k++r+r + r gC a+++v ++  +kw+vtkl+leH+H +
  XP_010914954.1  86 FYNAYALRIGFGIRVARSRSERRKGveVLVMKRFVCLKEGHHKKKVTEyTTKKKRKRLSIRDGCPAMMEVVRRGPDKWVVTKLVLEHTHVV 176
                     9**************9999886665216789***********9998887999999**********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2086177IPR004330FAR1 DNA binding domain
PfamPF105513.4E-27264355IPR018289MULE transposase domain
PROSITE profilePS5096610.583542578IPR007527Zinc finger, SWIM-type
PfamPF044342.4E-10543576IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-7553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MEYSSSEDDE LVEDCVDLEE DIGASDVDQR TSEVTASLHF GDQLCNSVVT VENSVGNVLL  60
TTDGEVKNEE PYLGMVFDSD SSARAFYNAY ALRIGFGIRV ARSRSERRKG VEVLVMKRFV  120
CLKEGHHKKK VTEYTTKKKR KRLSIRDGCP AMMEVVRRGP DKWVVTKLVL EHTHVVVSPD  180
KVREIQLNHL SGKDREHENY LREMRQKIFG EGDAQGLLEY FKRMQAENSG FFYAVQVDNR  240
NCMTNVFWAD AKARMAYNYF GDAVTFDTTY KKNENMIPFA AFTGVNHHGQ PVVFGCALVV  300
DKTESSFAWL FETWLTAMFG HRPISFTTDQ GKAMEVAVAK VFPNTRHRVC RWRVLSRCKK  360
KLSDVCSRYP TFYVELKKCV NESDTDDVFE MYWRSILDKY GLRENTWLQL LYNVRHKWVP  420
AYLKSFFFAE LSTTQKLESM NRFYRNNFDK KISLHAFIAK FDQAMDCRFE REAQEDLAVL  480
HDQRILKTDA PLEKQAANIY TRTVFEKFQV ELIEALDYSV KIQDGAISKF SVERDGDACN  540
RHIVFLNVSE KKACCSCSKF DFSGILCRHV LAVFLVTGVI LLPEHYILKR WTRKAKSGLV  600
LEDDRGVEFQ NYCQSSPILR YNDLVHDAMK CVEKGAASAE TYKIVKDILQ KAFAEIVALE  660
ENVAKARSHH AENM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127141KKKVTEYTTKKKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914954.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_010914955.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3Q0I2L40.0A0A3Q0I2L4_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008792125.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-163FAR1-related sequence 5