PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915067.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 240aa    MW: 27129.4 Da    PI: 10.3444
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915067.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.4e-32163221159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  XP_010915067.1 163 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 221
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-34148221IPR003657WRKY domain
SuperFamilySSF1182908.63E-29155222IPR003657WRKY domain
PROSITE profilePS5081129.574158223IPR003657WRKY domain
SMARTSM007744.0E-37163222IPR003657WRKY domain
PfamPF031062.1E-25164220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MFPSTTSAVL NQGLVASQET MVTSHMSFTP QTSPLPHLAF SPYGLQHSLG GDAPSNPRES  60
LPSLPLRLRV GGSPQIGASA VQRPSSNILW PWNEEWSLNN KRSSVGEAHH NNNRNNSSTS  120
NIGSSSSINC LSVSALRMKK MKARRKVREP RFCFKTMSEV DVLDDGYKWR KYGQKVVKNT  180
QHPRSYYRCT QDNCRVKKRV ERLAEDPRMV ITTYEGRHAH SPSHDEDDQN RAASQINFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27154220874Probable WRKY transcription factor 4
2lex_A2e-27154220874Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915067.10.0probable WRKY transcription factor 13
TrEMBLA0A2H3Y4U71e-158A0A2H3Y4U7_PHODC; probable WRKY transcription factor 13
STRINGXP_008793465.11e-159(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-52WRKY DNA-binding protein 13