PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010915156.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WRKY

Protein Properties

Length: 632aa MW: 67777.9 Da PI: 7.5157

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010915156.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.4	1.9e-30	281	340	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+aed++++++tYeg+Hnh+ XP_010915156.1 281 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCAEDTSILITTYEGTHNHP 340 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-32	266	342	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-27	274	342	IPR003657	WRKY domain
PROSITE profile	PS50811	28.541	276	342	IPR003657	WRKY domain
SMART	SM00774	1.1E-36	281	341	IPR003657	WRKY domain
Pfam	PF03106	8.1E-27	282	340	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence Send to blast
MEVLLKRSLV VEEDKRPKSL GDEEGGDIGK VFKTLGLPIG FTVLGGEKPA ADRDFSKSPS 60 PNQSDSIINK QASAKIPSER SSMDASSRPS CLKLEDSVTM SKVDQLESTK AEMGEVREEN 120 ERLKTTLARI FKDYQSLQMH FFDIVQQQQV QKPVETPPAP NEVEEPELVS LSLGTTLSGH 180 KKEEKVNTNK SKENHEQLEG GLTLGLDCKF EGSSSNGTNE PGSNVSPGNS FGEPKEAEPE 240 EPWPPSKTLK NLRSGDDEVS QQPFVKKARV SVRARCDAPT MNDGCQWRKY GQKIAKGNPC 300 PRAYYRCTVA PACPVRKQVQ RCAEDTSILI TTYEGTHNHP LPISATAMAS TTSAAACMLM 360 SGSSASRPTH GSLTSSSTVT TTTDAKLHGL NFNLSGNSRP GHFYLPNPSL SSTPSYPTIT 420 LDLTAPQSST SQPSHQFNRF SSNFATIPRY SSTGYSFSSS ESDTIPTSWG NSYLNYGNQP 480 YNKSFVGSLG LGRQSQDPFY QSYLNKAPNP SAPAPSQNSL TDTIAQAITS DPSFHSAIAA 540 AITSYVGANG AQGGRREGPG HGPKWGEHFN SVPPFSGTAT GNGCASSYLT TRSTASSSNP 600 QQGNLTFLQP SLGFPASKSA SASPVANRDN TN

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence Send to blast

MEVLLKRSLV VEEDKRPKSL GDEEGGDIGK VFKTLGLPIG FTVLGGEKPA ADRDFSKSPS  60
PNQSDSIINK QASAKIPSER SSMDASSRPS CLKLEDSVTM SKVDQLESTK AEMGEVREEN  120
ERLKTTLARI FKDYQSLQMH FFDIVQQQQV QKPVETPPAP NEVEEPELVS LSLGTTLSGH  180
KKEEKVNTNK SKENHEQLEG GLTLGLDCKF EGSSSNGTNE PGSNVSPGNS FGEPKEAEPE  240
EPWPPSKTLK NLRSGDDEVS QQPFVKKARV SVRARCDAPT MNDGCQWRKY GQKIAKGNPC  300
PRAYYRCTVA PACPVRKQVQ RCAEDTSILI TTYEGTHNHP LPISATAMAS TTSAAACMLM  360
SGSSASRPTH GSLTSSSTVT TTTDAKLHGL NFNLSGNSRP GHFYLPNPSL SSTPSYPTIT  420
LDLTAPQSST SQPSHQFNRF SSNFATIPRY SSTGYSFSSS ESDTIPTSWG NSYLNYGNQP  480
YNKSFVGSLG LGRQSQDPFY QSYLNKAPNP SAPAPSQNSL TDTIAQAITS DPSFHSAIAA  540
AITSYVGANG AQGGRREGPG HGPKWGEHFN SVPPFSGTAT GNGCASSYLT TRSTASSSNP  600
QQGNLTFLQP SLGFPASKSA SASPVANRDN TN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-21	281	342	17	77	Probable WRKY transcription factor 4
2lex_A	2e-21	281	342	17	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019704746.1	0.0	probable WRKY transcription factor 72 isoform X2
Swissprot	A0A3Q7GFB5	1e-122	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2H3ZZC5	0.0	A0A2H3ZZC5_PHODC; probable WRKY transcription factor 72 isoform X1
STRING	XP_008809713.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	6e-88	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]