PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010915169.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WRKY

Protein Properties

Length: 171aa MW: 18846.3 Da PI: 9.0294

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010915169.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.2e-30	90	148	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+++gC vkk+ver+ dp++v++tYeg Hnh+ XP_010915169.1 90 LDDGFKWRKYGKKSVKSSPNPRNYYRCSTEGCAVKKRVERDGGDPSYVITTYEGVHNHT 148 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.8E-32	78	150	IPR003657	WRKY domain
SuperFamily	SSF118290	7.19E-28	82	150	IPR003657	WRKY domain
PROSITE profile	PS50811	31.387	85	150	IPR003657	WRKY domain
SMART	SM00774	9.2E-35	90	149	IPR003657	WRKY domain
Pfam	PF03106	4.4E-24	91	147	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MAYLPTERTD WKAIAMSMAF AHHSGRPMEM NASDYLVYNE ASLACQLERP VPLMANGSST 60 SGIHGSGMQT AKMEGVFRVA FRTKSEIDIL DDGFKWRKYG KKSVKSSPNP RNYYRCSTEG 120 CAVKKRVERD GGDPSYVITT YEGVHNHTSP AVLYFTPKGN ASGASLIAGD Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-28	80	151	7	78	Probable WRKY transcription factor 4
2lex_A	9e-28	80	151	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010915169.1	1e-127	probable WRKY transcription factor 51
Swissprot	Q93WU9	2e-39	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A2H3Z609	1e-91	A0A2H3Z609_PHODC; probable WRKY transcription factor 51
STRING	XP_008808914.1	2e-92	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	7e-42	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]