PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915276.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 512aa    MW: 55601.5 Da    PI: 8.9346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915276.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057597123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010915276.1 75 FVCEICNKGFQRDQNLQLHRRGH 97
                    89*******************88 PP
2zf-C2H211.20.0012151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H + +
  XP_010915276.1 151 WKCDKCSKKYAVQSDWKAHSKIC 173
                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-77497No hitNo description
SMARTSM003550.0177597IPR015880Zinc finger, C2H2-like
PfamPF121718.2E-57597IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355110116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-7146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MIKGLPIQQH QLVEENMSNL TSASGEASVT SNQQSSFASP NPAPVKKKRN LPGNPDPDAE  60
VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSSKE VKKKVYICPE  120
VTCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHS KICGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESARAI AANPLANHTS LLFSQPTSSR DPSPLPHAAL  240
QTQFPHLMRP TEANTNITGS HGLQELSLKR EQYFSMRPDI PPWLACQGPT SLNQLDFHSS  300
IYSTLSTRLE QQYSHENPAG PPPPLPPPYQ GPSSAASSHM SATALLQKAA QMGATVSRPP  360
LHDQMATHTA NATVGNTTTG FGLGLSSHQE MAGGGAGGFG HGSAPPLLQD MMMNSLPTAP  420
CFGGSFEEAF GGMLGAKREE NSKVESIARS HGRNEEGGSG GAGGGGNDGL TRDFLGLRAF  480
SHRDFINMAG LNSCMSSSSY EQPQQNKQPW HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34147208364Zinc finger protein JACKDAW
5b3h_F1e-34147208364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915277.10.0protein indeterminate-domain 7
TrEMBLA0A2H3XE940.0A0A2H3XE94_PHODC; protein indeterminate-domain 7-like
STRINGXP_008782520.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2