PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915683.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 359aa    MW: 37838.9 Da    PI: 5.6448
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915683.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.21.9e-17253287135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG+++++ +l
  XP_010915683.1 253 CLHCATEKTPQWRTGPMGPKTLCNACGVRFKSGRL 287
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.1E-7617338IPR016679Transcription factor, GATA, plant
SMARTSM004017.3E-17247297IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.176247283IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-14249284IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-15250311No hitNo description
CDDcd002024.45E-14252299No hitNo description
PROSITE patternPS003440253278IPR000679Zinc finger, GATA-type
PfamPF003203.4E-15253287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEAPEYIHGG YYRAGTPQFA PEKKAGSGGG EHFMVEELLD FSNEEEDEVG LAVGADDAGF  60
DAAAGNSTDT STVTAVDSCS NSFSGSDPHF AGDLVCRSFA DASLSGDLCE PYEELAELEW  120
LSNFVEESFS SEDIQKLQLI SGVKSSSTSS ENRAEISANA GGGAAGRAAQ PALFRAEAPV  180
PGKARSKRSR AAPSSWSSRL PELSPTTTAS SAESELIVPA GNFPGKKAAA KPAKKKEPSA  240
GPAVAPAADG RKCLHCATEK TPQWRTGPMG PKTLCNACGV RFKSGRLVPE YRPAASPTFV  300
LSKHSNSHRK VLELRRQKEL QQQQLLQAGA AAVYDGNTGG AGDDFLIHHH LGPDFRQLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915683.10.0GATA transcription factor 12
TrEMBLA0A2H3YWP30.0A0A2H3YWP3_PHODC; GATA transcription factor
STRINGXP_008804627.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-47GATA transcription factor 12