PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010916011.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 428aa MW: 46847.2 Da PI: 6.6623

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010916011.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.4	3.3e-28	153	207	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQkYR++ XP_010916011.1 153 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNVASHLQKYRSH 207 5689***************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.055	150	209	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-18	151	210	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-27	151	210	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-26	153	207	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-8	156	205	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010638	Biological Process	positive regulation of organelle organization
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MLAVSPLRGS NGEERDGGVG ELPSNFSGDT LLEDINFDDL FMEFDDGDIL PNLEVDPAEI 60 FSELLAGGEE DSSGMAMAVE SAVGSNGAGQ ENGLMEGEMK VEKDLSQREE VTSATTREDT 120 VAMATEVRSP SSEAGRGRKS SATATKNSQG KRKVKVDWTP ELHRRFVQAV EQLGVDKAVP 180 SRILELMGID CLTRHNVASH LQKYRSHRKH LLAREAEAAS WSQRRQMYAA SGASAKRDLN 240 PWLAPTIGFP PPPPPPPPPP PPIQSFRPLH VWGHPTVDPP LVHMWPRHLA PRTPTPPWAP 300 RPPLPPPSNP SFWHHHYHKG FRDGWVPHTL AQGTPCFPHA LPTRFLAPPV PGVLPYPFYR 360 SLPPPATKHP VPQIQLDAHP SKESIDAAVG DVLAKPWLPL PLGLKPPSLE SVLVELQRQG 420 PLNSLVLV

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MLAVSPLRGS NGEERDGGVG ELPSNFSGDT LLEDINFDDL FMEFDDGDIL PNLEVDPAEI  60
FSELLAGGEE DSSGMAMAVE SAVGSNGAGQ ENGLMEGEMK VEKDLSQREE VTSATTREDT  120
VAMATEVRSP SSEAGRGRKS SATATKNSQG KRKVKVDWTP ELHRRFVQAV EQLGVDKAVP  180
SRILELMGID CLTRHNVASH LQKYRSHRKH LLAREAEAAS WSQRRQMYAA SGASAKRDLN  240
PWLAPTIGFP PPPPPPPPPP PPIQSFRPLH VWGHPTVDPP LVHMWPRHLA PRTPTPPWAP  300
RPPLPPPSNP SFWHHHYHKG FRDGWVPHTL AQGTPCFPHA LPTRFLAPPV PGVLPYPFYR  360
SLPPPATKHP VPQIQLDAHP SKESIDAAVG DVLAKPWLPL PLGLKPPSLE SVLVELQRQG  420
PLNSLVLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	5e-16	150	205	2	57	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269\|PubMed:19808806}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:11340194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010916011.1	0.0	probable transcription factor GLK1 isoform X2
Swissprot	Q5Z5I4	4e-94	GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBL	A0A2H3XFT7	0.0	A0A2H3XFT7_PHODC; probable transcription factor GLK1
STRING	XP_008783138.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	5e-80	GBF's pro-rich region-interacting factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y, et al. A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes. Plant Methods, 2011. 7(1): p. 30 [PMID:21961694]