PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916012.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family G2-like
Protein Properties Length: 312aa    MW: 33558.9 Da    PI: 4.6239
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916012.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.54.7e-26153205154
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQ +R
  XP_010916012.1 153 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNVASHLQGFR 205
                     5689*****************.*******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.503150209IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-23151205IPR009057Homeodomain-like
SuperFamilySSF466896.45E-16151205IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-24153206IPR006447Myb domain, plants
PfamPF002491.2E-6156202IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MLAVSPLRGS NGEERDGGVG ELPSNFSGDT LLEDINFDDL FMEFDDGDIL PNLEVDPAEI  60
FSELLAGGEE DSSGMAMAVE SAVGSNGAGQ ENGLMEGEMK VEKDLSQREE VTSATTREDT  120
VAMATEVRSP SSEAGRGRKS SATATKNSQG KRKVKVDWTP ELHRRFVQAV EQLGVDKAVP  180
SRILELMGID CLTRHNVASH LQGFRDGWVP HTLAQGTPCF PHALPTRFLA PPVPGVLPYP  240
FYRSLPPPAT KHPVPQIQLD AHPSKESIDA AVGDVLAKPW LPLPLGLKPP SLESVLVELQ  300
RQGVSKVPPM CG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16150205257ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916011.11e-139probable transcription factor GLK1 isoform X2
SwissprotQ5NAN52e-40GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A2H3XFT71e-114A0A2H3XFT7_PHODC; probable transcription factor GLK1
STRINGXP_008783138.11e-115(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.19e-38GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]