PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010916020.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 180aa MW: 19899.7 Da PI: 9.5894

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010916020.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.3	2e-16	21	71	3	53
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +R++ +++q+eeLe+++ +++ p+ae++e LAk +gL+ ++V+ WF NrR XP_010916020.1 21 RRHRKNPHQVEELEKAYSEENSPTAEMKESLAKMTGLNFKRVQAWFGNRRS 71 79999*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-14	15	71	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.588	16	76	IPR001356	Homeobox domain
SMART	SM00389	1.2E-11	18	80	IPR001356	Homeobox domain
Pfam	PF00046	6.9E-14	21	72	IPR001356	Homeobox domain
CDD	cd00086	3.50E-13	21	83	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-15	22	74	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MEPGEDRKGK MPLEGGDMPA RRHRKNPHQV EELEKAYSEE NSPTAEMKES LAKMTGLNFK 60 RVQAWFGNRR SYNRYGPRSK KHQIDGDGGL LRSPTISGSG DGSSSQSAPP RAPPPTPPLT 120 VPVLPVLQQV LAPPPPESQQ QQLQQAVHSD SSEALPDLPI ITILRIFVFL ICRIFCRIAS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-08	homeobox 1