PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916111.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27453.9 Da    PI: 9.3808
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916111.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.42.1e-2452101150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                     krien ++rq tf kRr g++KKA ELS+LCda+ ++++fss+gklyey 
  XP_010916111.1  52 KRIENPIQRQSTFYKRRDGLFKKARELSILCDADLLLLLFSSSGKLYEYH 101
                     79***********************************************6 PP
2K-box31.76.6e-12119213599
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++++ +   + + + e++k++k  e L+r +R ++ +  +  sl  L  Le +Le +++k+Rs K++ ++ +i++l ++ ++ q+e  +L  k++
  XP_010916111.1 119 TQNKIWRDLHLERNAEMEKVQKLCELLERDLRFMKVDASQHYSLPVLDVLEGNLEAAINKVRSEKDRKIVGEINHLENMVRDRQQERYDLGDKVA 213
                     56668999999999*************************************************************************99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.18844104IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-3344103IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-2646132IPR002100Transcription factor, MADS-box
PROSITE patternPS00350046100IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-234666IPR002100Transcription factor, MADS-box
PfamPF003192.2E-2253100IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-236681IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-2381102IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.917128218IPR002487Transcription factor, K-box
PfamPF014866.4E-11131212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSPFPYLCKF LQVTRALYTS PGVASLVLER GRCICFWCCE KRTMVRGRRE IKRIENPIQR  60
QSTFYKRRDG LFKKARELSI LCDADLLLLL FSSSGKLYEY HTPSVPSAEE LVKRYEVATQ  120
NKIWRDLHLE RNAEMEKVQK LCELLERDLR FMKVDASQHY SLPVLDVLEG NLEAAINKVR  180
SEKDRKIVGE INHLENMVRD RQQERYDLGD KVARAQGLKD MAVPLNRLDL KLGFS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916111.11e-174MADS-box transcription factor 32
SwissprotQ8S1515e-82MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A2H3ZDG51e-110A0A2H3ZDG5_PHODC; MADS-box transcription factor 32-like
STRINGXP_008812160.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-16MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]