PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916144.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27544.6 Da    PI: 10.16
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916144.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.7e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtf+kRr g+lKKA+EL +LCdae+a++ifsstg+ly++ss
  XP_010916144.1 10 RIDNSTSRQVTFCKRRSGLLKKAKELAILCDAEIALVIFSSTGRLYDFSS 59
                    8***********************************************96 PP
2K-box86.55.4e-2978169898
           K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     + l+++  + +q+e+a L+++++nLq+++R+l+Ge+L+ L++k Lq+Le+qLe sl+++R+kK+++l+++i+el +k   +++en++L k++
  XP_010916144.1  78 QvLNATSVKFWQREAASLRQQLQNLQENHRQLMGEELSGLNVKGLQNLENQLEMSLRSVRKKKEQILTDEIQELNRKGYLIHNENMELYKQV 169
                     247788899*******************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.427161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.30E-43278No hitNo description
SuperFamilySSF554552.22E-31286IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2783169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.63485175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FCKRRSGLLK KAKELAILCD AEIALVIFSS TGRLYDFSSS  60
SMKSIIDRYN RTKEEHHQVL NATSVKFWQR EAASLRQQLQ NLQENHRQLM GEELSGLNVK  120
GLQNLENQLE MSLRSVRKKK EQILTDEIQE LNRKGYLIHN ENMELYKQVN LIRQENMELR  180
KKVCATNELN GGASKDTIIP YGLTMTQNSH APIHLELCQP QQQTDGTQAR APKLRLQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21185185MEF2C
5f28_B5e-21185185MEF2C
5f28_C5e-21185185MEF2C
5f28_D5e-21185185MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916144.11e-177MADS-box transcription factor 23-like isoform X3
RefseqXP_029119195.11e-177MADS-box transcription factor 23-like isoform X3
SwissprotQ6EP491e-111MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A2H3ZN671e-156A0A2H3ZN67_PHODC; MADS-box transcription factor 23-like
STRINGXP_008776416.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-98AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]