PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916181.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 293aa    MW: 33257.4 Da    PI: 6.0448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916181.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd++l+d +   G  +W+++++  g+ R++k+c++rw +yl
   XP_010916181.1 14 KGPWTTEEDKKLIDFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.81.9e-1670111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++ E++l ++++ +lG++ W++Ia++++ gRt++++k++w+++
   XP_010916181.1  70 LSESEEKLVIELHSRLGNK-WSKIASHLP-GRTDNEIKNHWNTH 111
                      5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-20563IPR009057Homeodomain-like
PROSITE profilePS5129413.539961IPR017930Myb domain
SuperFamilySSF466894.12E-2711108IPR009057Homeodomain-like
SMARTSM007173.2E-121363IPR001005SANT/Myb domain
PfamPF002491.2E-141461IPR001005SANT/Myb domain
CDDcd001672.08E-81661No hitNo description
PROSITE profilePS5129426.71362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2464116IPR009057Homeodomain-like
SMARTSM007173.2E-1566114IPR001005SANT/Myb domain
PfamPF002493.4E-1570111IPR001005SANT/Myb domain
CDDcd001673.75E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTTE EDKKLIDFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SESEEKLVIE LHSRLGNKWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPITHRPIS STDEHHHQTG QQQQQEQVGV VAGEDKRSEN IILQCSQSQE EEKSVSVSSS  180
FDFIETDTFL QKSPGFCTDE VPMIQPHEII VPCASTASYS STSLPSSCLS SSPSVKAEEI  240
QFPCMEWPDP MYFYGMDDFS QWDPIPNNGD GELAFDPLNQ LYQRTAGDQE SWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916181.10.0transcription factor MYB20
SwissprotQ9C7U76e-92MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A2H3YQT41e-148A0A2H3YQT4_PHODC; transcription factor MYB20-like
STRINGXP_008802445.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-86myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]