PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916233.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARR-B
Protein Properties Length: 527aa    MW: 58068.2 Da    PI: 6.9188
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916233.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.9e-29222275155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++Wt eLH++Fv+av+qL G ++A+Pk+il+lm+v+gLt+e+v+SHLQk+Rl
  XP_010916233.1 222 KPRVVWTVELHQQFVNAVNQL-GVDRAVPKRILDLMNVPGLTRENVASHLQKFRL 275
                     79*******************.********************************8 PP
2Response_reg731.1e-24391471109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++l+++l + +y +v+++  ++ al +l+e++  +D+++ D+ mp+mdG++ll+ i  e  +lp+i+++a    + + + +k G
  XP_010916233.1  39 VLVVDDDTTCLKVLERMLLECHY-NVTTCNMATTALSILRESKggFDVVMSDVHMPDMDGFKLLELIGLEM-DLPVIMMSADMRTSIVMQGIKHG 131
                     89*********************.******************99***********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_010916233.1 132 ACDYLIKPVRMEELKN 147
                     *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.3E-16015524IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.3E-4135172No hitNo description
SuperFamilySSF521722.99E-3536179IPR011006CheY-like superfamily
SMARTSM004486.9E-2637149IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.61938153IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-2239147IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.47E-2540152No hitNo description
PROSITE profilePS5129411.658219278IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-30219280IPR009057Homeodomain-like
SuperFamilySSF466892.6E-20220279IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-25222275IPR006447Myb domain, plants
PfamPF002491.0E-7224273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MATVQQMPLS SMDMGSVYGG SSSKVNKPMP KDFPMGLRVL VVDDDTTCLK VLERMLLECH  60
YNVTTCNMAT TALSILRESK GGFDVVMSDV HMPDMDGFKL LELIGLEMDL PVIMMSADMR  120
TSIVMQGIKH GACDYLIKPV RMEELKNIWQ HVVRKKWKEN REAEHSDSFE DTDHNRRVID  180
DAEKTSSGTD ATDNICKSQK KRRDVKEDDE GELDNTDSSS KKPRVVWTVE LHQQFVNAVN  240
QLGVDRAVPK RILDLMNVPG LTRENVASHL QKFRLYLKRL SSAQHHTGLP ISLPDAGSNA  300
EVPSLGSLDF QTLTVSGQIP PQTLAAWQDE LFGRPAGSLG MPEMVQPVLQ QASIQGAKSV  360
PVEHGIVFGQ PLIKCQANMP KQFPQSNVAV RGLSSGFPTW SSNNLGVVSG SNLGGLSSTQ  420
NSNLLVPMLQ QQQPHPVLSE SHHAINVQPS CLVLPSQVSK RFQAREKPVL VNQNSVLVPS  480
QSSTSLQAEN NPTMNQNSIF APPKSSNSMQ AGTHGSFSII NQFPRWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-23218281164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916229.10.0two-component response regulator ORR21 isoform X1
RefseqXP_010916230.10.0two-component response regulator ORR21 isoform X1
RefseqXP_029119212.10.0two-component response regulator ORR21 isoform X1
RefseqXP_029119213.10.0two-component response regulator ORR21 isoform X1
RefseqXP_029119214.10.0two-component response regulator ORR21 isoform X1
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S70.0ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2H3WYF00.0A0A2H3WYF0_PHODC; LOW QUALITY PROTEIN: two-component response regulator ORR21
STRINGXP_008775607.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-122response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]