PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010916575.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YC

Protein Properties

Length: 252aa MW: 27764.3 Da PI: 5.5

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010916575.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.9	5.2e-19	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v++ fdfl+d+v + XP_010916575.1 7 TRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTVNSLHLKQCVKSYSAFDFLTDVVNK 86 579**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.0E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	9.11E-20	3	97	IPR009072	Histone-fold
Pfam	PF00808	6.4E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MRKKLGTRFP ASRIKKIMQA DEDVGKIALA VPLLVSKALE LFLQDLCDRT YEVTLQRGAK 60 TVNSLHLKQC VKSYSAFDFL TDVVNKVPNL GGTEPYGDEK GISRRRKTLP HDGDVETNQE 120 LRSPKLAMRS ANIGPRGRGR GRGRGRGRPR TRGIGCVKYE DDNDMFHELG DLSREIDGEE 180 KPLSGKEDMA QSADPPCNSA SVMGATSTAE AKQEGCSAWP LPDVVANIGI EPSSLVQLNM 240 QIDEDEDYDN ED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	107	SRRRKT
2	137	146	RGRGRGRGRG
3	141	151	RGRGRGRPRTR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010916575.1	0.0	dr1-associated corepressor isoform X1
TrEMBL	A0A2H3YQC1	1e-136	A0A2H3YQC1_PHODC; dr1-associated corepressor-like
STRING	XP_008802064.1	1e-137	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-53	nuclear factor Y, subunit C11