PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010916830.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WRKY

Protein Properties

Length: 346aa MW: 38540.6 Da PI: 5.4494

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010916830.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.2	4.4e-30	150	208	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp ++++tY+ +H+h+ XP_010916830.1 150 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRTDPAMLVVTYTADHDHP 208 79***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-30	135	210	IPR003657	WRKY domain
PROSITE profile	PS50811	33.35	144	210	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-25	146	210	IPR003657	WRKY domain
SMART	SM00774	2.0E-35	149	209	IPR003657	WRKY domain
Pfam	PF03106	1.4E-24	151	208	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MDVDNWDLEA VVRGCCFRRP STRTTSTATM TDPFSSFASL VLKGEQGDGE KDHLFGFPDI 60 MDTETAFRDL EDLCKPFFHT PHQQPSQQQS QLFPQQSRPS SSPAVADPCQ TQQQWSPPQR 120 PLEANTPRSR RRKNQQKRVV RHVPADGLYS DMWAWRKYGQ KPIKGSPYPR GYYRCSSSKG 180 CLARKQVERS RTDPAMLVVT YTADHDHPLP THRNSLAGST RQKLPPPPAP AATSPSASGG 240 GQDGDRMPPF STPSSCVEDE HLRQRKGEEE EDEEEEEVLT VADIEMVGEE DVLFWEFEQG 300 GGRRGVGARE LPAISGFYAD EGGYADHFFA STWMANSNAA AAAWGS

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MDVDNWDLEA VVRGCCFRRP STRTTSTATM TDPFSSFASL VLKGEQGDGE KDHLFGFPDI  60
MDTETAFRDL EDLCKPFFHT PHQQPSQQQS QLFPQQSRPS SSPAVADPCQ TQQQWSPPQR  120
PLEANTPRSR RRKNQQKRVV RHVPADGLYS DMWAWRKYGQ KPIKGSPYPR GYYRCSSSKG  180
CLARKQVERS RTDPAMLVVT YTADHDHPLP THRNSLAGST RQKLPPPPAP AATSPSASGG  240
GQDGDRMPPF STPSSCVEDE HLRQRKGEEE EDEEEEEVLT VADIEMVGEE DVLFWEFEQG  300
GGRRGVGARE LPAISGFYAD EGGYADHFFA STWMANSNAA AAAWGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	151	211	18	80	Disease resistance protein RRS1
5w3x_D	2e-20	151	211	18	80	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010916830.1	0.0	WRKY transcription factor 22
TrEMBL	A0A2H3X064	1e-166	A0A2H3X064_PHODC; WRKY transcription factor 22-like
STRING	XP_008776340.1	1e-167	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5358	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	9e-47	WRKY family protein