PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916895.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 348aa    MW: 38061.6 Da    PI: 5.6662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916895.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19171220255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ta+eAa a+++a+ kl+g
  XP_010916895.1 171 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAKEAALAYDRAAYKLRG 220
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.76E-33170230No hitNo description
SuperFamilySSF541711.63E-22171228IPR016177DNA-binding domain
PROSITE profilePS5103222.932171228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-32171229IPR001471AP2/ERF domain
SMARTSM003802.8E-36171234IPR001471AP2/ERF domain
PRINTSPR003671.3E-10172183IPR001471AP2/ERF domain
PfamPF008477.8E-14172220IPR001471AP2/ERF domain
PRINTSPR003671.3E-10194210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAAAIDIFTC SSDPLREELM QALEPFMKGV STCSSSYNSS FHPTTPESPS PSSSPSSSPS  60
PPPFLSSYSS PFSFSSPSYS YQIPTLDCSL ASTSISDMIP QAVLIQDSHS FGRPGPVGLD  120
YLSLAPIQQI QVQFQHQNPR QSQQQMSLLG MRPQPMKRTG SPLPLPKPTK LYRGVRQRHW  180
GKWVAEIRLP RNRTRLWLGT FDTAKEAALA YDRAAYKLRG DAARLNFPEL RCSGAHLSVP  240
LHSSVDAKLQ AICQSLASSK KQGKGVSNSV IPEEVGTKGE LACSGTDDNK SESSSSVDGD  300
ESSSGSLAVS EMQYLDFTEA PWDESESFML TKYPSWDIDW ESILSSDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21170228160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916895.10.0ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2H3YUL91e-169A0A2H3YUL9_PHODC; ethylene-responsive transcription factor RAP2-4-like
STRINGXP_008803760.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-60related to AP2 4