PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010916941.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 373aa MW: 42415.3 Da PI: 6.8536

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010916941.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37	7.5e-12	77	119	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +k+ rr+++NReAAr+sR+RKk +i++Lee +L++ ++L XP_010916941.1 77 DKVLRRLAQNREAARKSRLRKKVYIQQLEESRMKLTQLEQELE 119 7999**************************8888887776443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.9E-8	67	121	No hit	No description
SMART	SM00338	5.3E-7	74	135	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.864	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.3E-9	77	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.38E-7	78	122	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-30	174	247	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MSFQSTRYSS CSTMGIYEQN HQVSMWDDSF RADSSQYTCS STVLEADVKI DSGFENITHE 60 TLGSSKKSNQ EANKPGDKVL RRLAQNREAA RKSRLRKKVY IQQLEESRMK LTQLEQELEQ 120 VRQQELESIM SGRHTILLLS SCAPYIDPCL GLVGIAAFEM EYGHWVEEQN RHTCGLRAAL 180 HAHVSDLELR ILVESGMRHY DELFRIKALA AKSDVFYLMS GMWKTSAERF FLWIGGFRPS 240 EILKVVSPQL DPLTEQQLVA VYNLQQSSQQ AEDALSQGLD KLRQTLAETI ISDPLDTPNM 300 ANYMGLMTNA MGKLEALISF VNQADHLRHQ TLQLVYQILT TRQAARGLLA IGDYFQRLRA 360 LSSLWAARPR ELA

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MSFQSTRYSS CSTMGIYEQN HQVSMWDDSF RADSSQYTCS STVLEADVKI DSGFENITHE  60
TLGSSKKSNQ EANKPGDKVL RRLAQNREAA RKSRLRKKVY IQQLEESRMK LTQLEQELEQ  120
VRQQELESIM SGRHTILLLS SCAPYIDPCL GLVGIAAFEM EYGHWVEEQN RHTCGLRAAL  180
HAHVSDLELR ILVESGMRHY DELFRIKALA AKSDVFYLMS GMWKTSAERF FLWIGGFRPS  240
EILKVVSPQL DPLTEQQLVA VYNLQQSSQQ AEDALSQGLD KLRQTLAETI ISDPLDTPNM  300
ANYMGLMTNA MGKLEALISF VNQADHLRHQ TLQLVYQILT TRQAARGLLA IGDYFQRLRA  360
LSSLWAARPR ELA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029119361.1	0.0	transcription factor TGA4 isoform X1
Swissprot	Q39162	1e-145	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A2H3Z5U9	0.0	A0A2H3Z5U9_PHODC; transcription factor TGA4-like isoform X1
STRING	XP_008808847.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-138	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]