PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917042.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 306aa    MW: 33544.8 Da    PI: 7.2878
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917042.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++++ g+ R+ k+c++rw +yl
   XP_010917042.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPAKTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.83.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_010917042.1  67 RGNFTDQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.789961IPR017930Myb domain
SuperFamilySSF466893.28E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-141363IPR001005SANT/Myb domain
PfamPF002491.5E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-241568IPR009057Homeodomain-like
CDDcd001671.69E-111661No hitNo description
PROSITE profilePS5129424.88762116IPR017930Myb domain
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002493.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2569117IPR009057Homeodomain-like
CDDcd001673.72E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRLPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PAKTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKLE  120
TGADGLTTSG VSSHQSISKG QWERRLQTDI NTAKQALCEA LSLEKPNCLS SSKASSSGSN  180
SSTRLSTYAS STENISRLLE GWMRKSTRPG ACQANSGSTQ TDSACSQGTP SATNCILSLE  240
PPELLFGPDS STPEASETSL QGEERKLVWE AQEPLSLIES WLLDESVGQG QLSLLDMALD  300
DASGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-261411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-261411658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-261411627128MYB TRANSFORMING PROTEIN
1mse_C1e-26141164105C-Myb DNA-Binding Domain
1msf_C1e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917042.10.0myb-related protein 306
SwissprotP813921e-111MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2H3YPV30.0A0A2H3YPV3_PHODC; myb-related protein 306-like
STRINGXP_008801687.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.14e-97myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]