PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917164.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 887aa    MW: 101461 Da    PI: 6.4297
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917164.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.44.7e-13202283191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY++YA+++GF +++ +s +  ++g++    + C++ gk + +++k        +  +t+C+ ++ +  +kdg  +v+k  ++HnH+l+p
  XP_010917164.1 202 RFYDQYARRTGFGIKILHSMYY-KDGRCRYLMLSCNRDGKVNYKSEK--------VAPKTNCNTRFGLVCHKDGLLHVKKAINDHNHPLTP 283
                     5*****************9998.7888**************998777........999******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-10202283IPR004330FAR1 DNA binding domain
PfamPF105511.8E-32388481IPR018289MULE transposase domain
PROSITE profilePS509669.668675711IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-7676707IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-5686713IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MGEPSDYNLD LVPVSGSSIA GEGWEPHAEK VQEPIVGGQN FINEERQEFV VGEGPELVAK  60
GGQQPLAVVA KRGQQPLAEN ASVCVSGSSI AKEGWKPDAE KVQEPIVRGG QDFINEKGKD  120
CIVGEGPEPV AKRGQEPLTK NAPELIAGEE QEAITENEHE FAAGNQESVA EKEQEISQET  180
ILGDDSTPRV GMTFKSPEEA FRFYDQYARR TGFGIKILHS MYYKDGRCRY LMLSCNRDGK  240
VNYKSEKVAP KTNCNTRFGL VCHKDGLLHV KKAINDHNHP LTPGTAHSHP SKKRKQYLGD  300
IDEDRILSDK LCQEHGSTKS RKQGAGDNKC KLRLVEGDGE ALRQFFVGIQ MKNSCFFHSI  360
YLDEEGCLKN VFWADGRSRI AYRYFGDVVL FDSTFLMSKF YLPLVSIVGV NHHGRLVLLG  420
CALLSDETSE TYAWLFKTWL SCMLGQTPTA VITDRNRAIQ QAVAKVFPRA RHRQCMWHIM  480
KRLPENLQGC VQYKEIKKAF KRVVYDSLTA NEFEEDWRKM VEKYGLGDNE WIKVLYEDRH  540
CWAPVFVKDT FWAGMSITLR GESMNSFFHE YVNCKTTLQQ FLSEYEVIMQ RKHEKEVQAN  600
LESCHQSTQL ITQIYMEQQL CRVYTIDMFK KFQEEIKALE YCVSSLIKVD GRISIFEVQE  660
HVRAKDGKIM EQKSYEVRYN ENELEISCVC CSFQFRGILC RHALSVLHFN GVTELSSKYI  720
LQRWRKDFKQ MHSLNCFPNQ VVVDGTMECH EIFRNRCLKL AEIGMMFDEK HEFAEKVVNE  780
AIRKLLSDDS TCEDTQPETL SLEATTNCHM ASFSANGDRD MGNENHGIHD PLQVSRQIGN  840
HPHFQFFQER VQADQQSTGY RSGAEWSIQQ YFHDTQIPEA SPCSRSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917164.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_010917165.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_019704992.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_019704996.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_029119400.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_029119401.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_029119402.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBLA0A2H3XNV40.0A0A2H3XNV4_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRINGXP_008786606.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-134FAR1-related sequence 6