PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917170.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 228aa    MW: 25480.6 Da    PI: 6.2788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917170.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l  +++ +G g W+ ++++ g++R++k+c++rw++yl
   XP_010917170.1 13 RGAWSPEEDRILTSYIETHGAGKWSNVPKEAGLNRCGKSCRLRWLNYL 60
                     89********************************************97 PP
2Myb_DNA-binding54.82.1e-1766110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
   XP_010917170.1  66 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTI 110
                      7999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.168860IPR017930Myb domain
SuperFamilySSF466898.99E-3110107IPR009057Homeodomain-like
SMARTSM007177.7E-151262IPR001005SANT/Myb domain
PfamPF002491.4E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-251467IPR009057Homeodomain-like
CDDcd001671.24E-111560No hitNo description
PROSITE profilePS5129426.13761115IPR017930Myb domain
SMARTSM007174.7E-1765113IPR001005SANT/Myb domain
PfamPF002491.4E-1566110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2668115IPR009057Homeodomain-like
CDDcd001677.97E-1370111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRTPICSQG LNRGAWSPEE DRILTSYIET HGAGKWSNVP KEAGLNRCGK SCRLRWLNYL  60
RPGLKRGNIT QEEEDLIIRL HKLLGNRWSL IAGRLPGRTD NEIKNYWNTI LRKKVQQGTL  120
AQAHELESGT ADQTGAVRTM ATRCSSSSML IDLKVDGEIQ LKDTAAGDQN CSGGESVPSS  180
DNPFSFSKDM VDGWMRGEES QPFFSWEFSS FASFMGTEDL PWSNDVFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-291111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917170.11e-170transcription factor TT2
SwissprotQ9FJA21e-61TT2_ARATH; Transcription factor TT2
TrEMBLA0A2H3XPA21e-128A0A2H3XPA2_PHODC; transcription factor TT2-like
STRINGXP_008786727.11e-129(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-64MYB family protein
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  3. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  4. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  5. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  6. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  7. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]