PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917232.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 444aa    MW: 50255.6 Da    PI: 9.5945
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917232.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23.1e-11165216955
             AP2   9 dkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010917232.1 165 HRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 216
                     789**********655454478446*************************98 PP
2AP246.77.9e-15261310355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010917232.1 261 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 310
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.331151224IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-13164226IPR016177DNA-binding domain
SMARTSM003802.8E-21164230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-13165225IPR001471AP2/ERF domain
PfamPF008474.5E-8165216IPR001471AP2/ERF domain
CDDcd000182.73E-15165226No hitNo description
SuperFamilySSF541719.81E-18259319IPR016177DNA-binding domain
CDDcd000186.86E-23259320No hitNo description
Gene3DG3DSA:3.30.730.103.3E-18260318IPR001471AP2/ERF domain
PROSITE profilePS5103219.203260318IPR001471AP2/ERF domain
SMARTSM003804.4E-33260324IPR001471AP2/ERF domain
PfamPF008471.1E-9261310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MSGSVNKFSS WPSRAHDAAW EIFLEDVWEA LCDRWSSESI LIDDRGPDRW AVQKNLIEHI  60
DGSVGTYVIA DRLVRKDQRR KKRWRSKAFA SVETKPLLTH LFPFRIREPS ISRRLCPFDM  120
KESPRERNQS TPAISHPVGV CSASVVYLQQ QLAGVNFEAN RCLLHRWTGR YEAHLWDNSC  180
RKEGQTRKGR QVYLGGYDKE EKAARAYDLA ALKYWGPTTQ LNFPLSSYEK ELEEMKNMTR  240
QEFVAHLRRN SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA  300
YDIAAIKFRG LNAVTNFDIT KYDVKRICLS SSLIAGDLAK RSPKDSSSLA EPTILIGRHD  360
EPLEPSNEVR SIANSFVSSS TGNANSTKSN RPERVHVVPL GAPKYENSDE NAGVGGNMDW  420
MTAEAGPIGF HVAHQLPMVA QWNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019704760.10.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2H3XRX81e-122A0A2H3XRX8_PHODC; AP2-like ethylene-responsive transcription factor AIL7
STRINGXP_008787841.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-111AP2 family protein