PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917236.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARR-B
Protein Properties Length: 436aa    MW: 48436.8 Da    PI: 6.4425
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917236.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.83.8e-21180233155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r+ WtpeL + F  aveqL G+e+A+P++i ++m+v+g+ ++hv SHLQkYR+
  XP_010917236.1 180 KRRIIWTPELNQIFEAAVEQL-GIEQAIPSKITQVMNVEGIDRHHVGSHLQKYRI 233
                     679******************.********************************7 PP
2Response_reg49.13e-17910411105
                     HHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS- CS
    Response_reg  11 rellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpf 102
                     +  l+ a++ +  + +v+++ d+  al +l e+   +Dl+l+D+emp+mdG+ellk  +++  ++p+i+++ ++  e + + ++ Ga  fl Kp+
  XP_010917236.1   9 LFRLTHAFTnSFSI-RVTACNDPICALSILLEQPdkFDLLLTDVEMPQMDGYELLKIVNKK-LRIPVILMSINARTEVMMKGIREGACYFLRKPI 101
                     55555566647778.999999*******99666666*******************988664.59******************************9 PP

                     -HH CS
    Response_reg 103 dpe 105
                     +++
  XP_010917236.1 102 SMN 104
                     876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011026.6931114IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.5E-93110IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.83E-175114No hitNo description
SuperFamilySSF521722.99E-2112115IPR011006CheY-like superfamily
PfamPF000722.1E-1412105IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.9E-2313129No hitNo description
PROSITE profilePS512949.042177236IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-22178237IPR009057Homeodomain-like
SuperFamilySSF466893.94E-15178236IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-18180234IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEIIHESLLF RLTHAFTNSF SIRVTACNDP ICALSILLEQ PDKFDLLLTD VEMPQMDGYE  60
LLKIVNKKLR IPVILMSINA RTEVMMKGIR EGACYFLRKP ISMNLVRNLW MHVLWKKFSD  120
NKEIKRSHGE GDKGKAPLVF DPSTPIDRAT SKGIRIDDGS NKGKMKQVQE QEDDPGKPKK  180
RRIIWTPELN QIFEAAVEQL GIEQAIPSKI TQVMNVEGID RHHVGSHLQK YRIRLRQKKE  240
RQQSYLSWNQ FHGRMNPSYP AEDMGNGTNN ISGPSSDPVL VPQAAIHPTW VNVPGTGNAI  300
LRSFSGSDQP QQIGGSAEQY YNTNCFPNTT FGATDVGINA QTFSTIPAQN IREEDTVPIT  360
EFASFDNSFQ APGTSTPGCH AGSGLAPSGL LTASGQSLPS NVGQENLCLH EAASSSRPTE  420
GGDIEKFLEE FLKEDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14179237462ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026659563.10.0two-component response regulator ARR14-like
TrEMBLA0A3Q0HY630.0A0A3Q0HY63_PHODC; two-component response regulator ARR14-like
STRINGXP_008786735.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5077422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.12e-44response regulator 14