PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917277.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB

Protein Properties

Length: 225aa MW: 26626.4 Da PI: 7.1708

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917277.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.9e-16	4	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g W + Ed++l+++v+ G+++W++Ia++++ gR++k+c++rw++ XP_010917277.1 4 KGHWRPAEDDKLKELVACCGPHNWNAIAEKLQ-GRSGKSCRLRWYNQ 49 789***************************.**********96 PP
2	Myb_DNA-binding	60.2	4.4e-19	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eE+e+l+ +++ +G++ W+ Iar ++ gRt++ +k++w+ + XP_010917277.1 56 RNPFTKEEEERLIACHQIHGNR-WAVIARLFP-GRTDNAVKNHWHVV 100 789*****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.971	1	50	IPR017930	Myb domain
SMART	SM00717	4.1E-13	3	52	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.74E-29	4	97	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-15	4	50	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-25	5	57	IPR009057	Homeodomain-like
CDD	cd00167	2.10E-11	7	48	No hit	No description
PROSITE profile	PS51294	25.153	51	105	IPR017930	Myb domain
SMART	SM00717	1.6E-16	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-16	56	99	IPR001005	SANT/Myb domain
CDD	cd00167	2.08E-11	58	101	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.9E-22	58	103	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MCTKGHWRPA EDDKLKELVA CCGPHNWNAI AEKLQGRSGK SCRLRWYNQL DPRINRNPFT 60 KEEEERLIAC HQIHGNRWAV IARLFPGRTD NAVKNHWHVV MARRRRERSR FHGKRALRNF 120 NKEGSSKQNN EEEPHELKNM VSFIENYGGR YQNHLALNDH HDHYFDMYEA DRDNSIEFHD 180 FLQVNSESNN TEDTSTRKEE QDEGKEQESE ANVRFIDFFA VGCSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-30	2	104	5	107	B-MYB
1mse_C	3e-30	1	104	1	104	C-Myb DNA-Binding Domain
1msf_C	3e-30	1	104	1	104	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:21399993, ECO:0000269\|PubMed:23781226}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19674407, ECO:0000269\|PubMed:21399993, ECO:0000269\|PubMed:22197883}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917277.1	1e-170	transcription factor MYB52 isoform X1
Swissprot	Q6R0C4	1e-69	MYB52_ARATH; Transcription factor MYB52
TrEMBL	A0A2H3Y140	1e-129	A0A2H3Y140_PHODC; transcription factor MYB52-like isoform X1
STRING	XP_008791853.1	1e-130	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP294	38	260

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	1e-63	myb domain protein 52

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226] Shi D, et al. MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage. Plant Physiol., 2018. 176(4): p. 2737-2749 [PMID:29440562]