PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917290.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 433aa    MW: 48387.6 Da    PI: 8.6992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917290.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-066486123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  XP_010917290.1 64 YVCEICNQGFQRDQNLQMHRRRH 86
                    9*********************9 PP
2zf-C2H216.32.8e-05141163123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k +  +s++k H++t+
  XP_010917290.1 141 WVCAKCSKAYAVQSDYKAHLKTC 163
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.93E-56187No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976486IPR007087Zinc finger, C2H2
SMARTSM003550.00526486IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359066146IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355240105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-4132162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035593141168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLDPPSPAPP QPLSINTSSI PPEPFPPLCN VNTTKKKRRP AGTPDPDAEV VSLSPRTLLE  60
SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKREATEV RKRVFVCPES SCLHHDPCHA  120
LGDLVGIKKH FRRKHSNHRQ WVCAKCSKAY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE  180
SFIEHQDACN AGRARAELQT LQPACLSRTA SSPSRSSDTN FSQAGWPGLP MPNLATIFLH  240
NDQIPSPQSD HRRTHHTELQ LLPPSNTKST SLPSPILSPT SHEAHATKLQ LSIGPGGDRA  300
PPEEPGSAAV RFKEEAREQL RLAMAEKALA DEARQQAKRQ IELAEQEFAN AKRIRHQAQV  360
EINRAHALRE HAVKQINSTL LQITCYACKQ QFHAKPIMAS DENSLVASYM SSVVTEGEEE  420
NDDQNQLQKI SST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-17139191557Zinc finger protein JACKDAW
5b3h_F3e-17139191557Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13438KKKRR
23439KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917290.10.0zinc finger protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-150IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A2H3Z1060.0A0A2H3Z106_PHODC; protein indeterminate-domain 16-like
STRINGXP_008806637.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-145C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]