PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917519.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARR-B
Protein Properties Length: 689aa    MW: 74845.5 Da    PI: 6.5512
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917519.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53.1e-28219272155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  XP_010917519.1 219 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 272
                     79*******************.********************************8 PP
2Response_reg80.74.9e-27341421109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++l+ +l++ +y +v+++ ++++al ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+i+++a g  + + + +k G
  XP_010917519.1  34 VLVVDDDVTCLRILEHMLQRCRY-HVTTCCQATQALSLLRERKggYDVVISDVHMPDMDGYKLLELVGL-EMDLPVIMMSADGRTSAVMRGIKHG 126
                     89*********************.***************999999*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_010917519.1 127 ACDYLIKPVRIEELKN 142
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-4231171No hitNo description
SuperFamilySSF521725.83E-3731163IPR011006CheY-like superfamily
SMARTSM004483.0E-3032144IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.93933148IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2334142IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.51E-2735148No hitNo description
PROSITE profilePS5129410.898216275IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-30216277IPR009057Homeodomain-like
SuperFamilySSF466891.97E-19217276IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-24219272IPR006447Myb domain, plants
PfamPF002491.0E-6221270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MATVQKLPGS STSTASSYGS CRVDDEQFPA GLRVLVVDDD VTCLRILEHM LQRCRYHVTT  60
CCQATQALSL LRERKGGYDV VISDVHMPDM DGYKLLELVG LEMDLPVIMM SADGRTSAVM  120
RGIKHGACDY LIKPVRIEEL KNIWQHVIRK KWNENRDLEH SGTMEESDRF RRVVDDTEYA  180
SSVNDGTDGT WKSQKKKRDT KEDEDDGELD NEDPSASKKP RVVWSVELHQ QFVSAVNQLG  240
IDKAVPKRIL ELMNVPGLTR ENVASHLQKF RLYLKRLSGV AQNQSVLPNS FCGSVEPNAK  300
LGSLGRFDFQ ALAASGQIPP QTLAALHVEL LGRPSGSLVL PAVDQPVLLH ASMRGPKCIP  360
VEQGVAFGQP LLKCQSSTQK QLPQSNIAVE DMSSGFSAWS GNQFSPTGTA GNLGGVNKSQ  420
SGNLLVQMLQ QQHPYPVLSE SNHAINVQPS CLIAPSQSSN GFQIGNSNVP INRNSTGDTS  480
LSSTSFQVRS NALPVNQNSN YTNSSTVMDC SLISSQSHNV PLDVEQVPDA DLKNVSVLNG  540
YSVPGSASPS VSSCSVRPES CTGWKVQNLV VNVAPASRLP AHLPSLCVQG SDPKMIALPD  600
QGRGRNLGFV GKGTCIPSRF AVDDNESPTN DPSHWNMCIG NERVRVKQET VLDFGDGFEG  660
EHAKLPHFSP SDLMGVLSKD GLAGCYLKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-23215278164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917519.10.0two-component response regulator ORR21 isoform X1
SwissprotA2XE311e-180ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-180ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2H3ZG410.0A0A2H3ZG41_PHODC; Two-component response regulator
STRINGXP_008812974.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-118response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]