PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917930.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 409aa    MW: 45499.2 Da    PI: 7.2193
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917930.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.58.5e-130534081374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lL+ecA av+++d   a+ +L +l++l+sp gd+mqR+a++f+ ALaarl+   +    a +p +     s +++++++++++++P++kf+h
  XP_010917930.1  53 LVHLLMECAMAVAKDDYFTARGYLHHLNHLVSPIGDSMQRVASCFADALAARLSP--P---PAPKPYP---APSLHTFKFYHILYQACPYFKFAH 139
                     68****************************************************9..2...2222233...33888999**************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+e+e+rvH++D++i qG QWpa+lqaLa+Rp+gpp lRiTgvg+     +e++++tg+ La++A++l+vpfef++ +a+rledl+
  XP_010917930.1 140 FTANQAILEAFESEDRVHVVDLNILQGHQWPAFLQALATRPGGPPALRITGVGH----PAESVHQTGRHLAELAHSLHVPFEFHPAIADRLEDLR 230
                     ******************************************************....89*********************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++L+ + gEalaVn v +lhr++      + + d +L+++++  Pk+v++ve ea+hn++ Fl rfleal y++alfdsl+a++p++s +r+kv
  XP_010917930.1 231 PSMLHRRVGEALAVNAVCRLHRVP------DIHLDWLLSTIRDQAPKIVTLVEIEASHNDPHFLGRFLEALPYFAALFDSLDATFPADSAARAKV 319
                     ***********************9......445688*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ ++++ei+n+va egaer++rhe+l +Wr+ +e  GFk v+ls + ++q + ll  ++ dgyr+ ee+g+++lgW+d++++++SaWr
  XP_010917930.1 320 EQYIFAPEIKNIVAREGAERVARHEKLDRWRKVMEGRGFKGVALSANSVDQSRILLGLYACDGYRLTEENGCMFLGWRDQRMIAASAWR 408
                     ****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.64627388IPR005202Transcription factor GRAS
PfamPF035142.9E-12753408IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MVRAMHCTVR CIACTTEDPR PPSPTASVSE SNAGASPEPE PNNPTIVVRG LLLVHLLMEC  60
AMAVAKDDYF TARGYLHHLN HLVSPIGDSM QRVASCFADA LAARLSPPPA PKPYPAPSLH  120
TFKFYHILYQ ACPYFKFAHF TANQAILEAF ESEDRVHVVD LNILQGHQWP AFLQALATRP  180
GGPPALRITG VGHPAESVHQ TGRHLAELAH SLHVPFEFHP AIADRLEDLR PSMLHRRVGE  240
ALAVNAVCRL HRVPDIHLDW LLSTIRDQAP KIVTLVEIEA SHNDPHFLGR FLEALPYFAA  300
LFDSLDATFP ADSAARAKVE QYIFAPEIKN IVAREGAERV ARHEKLDRWR KVMEGRGFKG  360
VALSANSVDQ SRILLGLYAC DGYRLTEENG CMFLGWRDQR MIAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-905940724377Protein SCARECROW
5b3h_D5e-905940724377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917930.20.0DELLA protein GAI1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A3Q0I5S50.0A0A3Q0I5S5_PHODC; DELLA protein RGL1-like
STRINGXP_008791129.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-88RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]