PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917936.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

YABBY

Protein Properties

Length: 220aa MW: 24444.1 Da PI: 8.2745

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917936.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	188.6	3.2e-58	3	148	3	161
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 + ++eqvCyv+CnfCntil+vsvP + ++++vtvrCGhC++llsvnl q+l+ + l++++ +++l++ ++++ ++ XP_010917936.1 3 AHIATEQVCYVHCNFCNTILVVSVPGSNSLTIVTVRCGHCANLLSVNLGALLQTLPQGVQ--------KLQNHNLGSQDLNMDCGSSSKCNKVSL 89 56789********************************************999998775........456666666666666666665555566 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 ++++++ +++ +p ir PekrqrvPsaynrfikeei+r+ka+nPdishreafsaaakn XP_010917936.1 90 MNSMENVQQQTLP-----IRLPEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNVV 148 6667777777777.....9*****************************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.9E-61	6	146	IPR006780	YABBY protein
SuperFamily	SSF47095	7.46E-6	102	144	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSAHIATEQV CYVHCNFCNT ILVVSVPGSN SLTIVTVRCG HCANLLSVNL GALLQTLPQG 60 VQKLQNHNLG SQDLNMDCGS SSKCNKVSLM NSMENVQQQT LPIRLPEKRQ RVPSAYNRFI 120 KEEIRRLKAT NPDISHREAF SAAAKNVVFL FLHQKSGHTF LISNSGYPWM GINNNSLARP 180 LIACQEEAHG EQMVELNYMF IGIISICVSV RSPCTYNDHI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019704395.1	1e-111	protein YABBY 2 isoform X2
Swissprot	Q10FZ7	4e-54	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A2H3XXR9	4e-95	A0A2H3XXR9_PHODC; protein YABBY 2-like isoform X2
STRING	XP_008790352.1	1e-93	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-51	YABBY family protein