PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917940.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family YABBY
Protein Properties Length: 217aa    MW: 24074.7 Da    PI: 8.1122
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917940.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1762.4e-5431453161
           YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                      + ++eqvCyv+CnfCntil+vsvP + ++++vtvrCGhC++llsvnl    q+l+   +           +++  +++l++   ++++ ++   
  XP_010917940.1   3 AHIATEQVCYVHCNFCNTILVVSVPGSNSLTIVTVRCGHCANLLSVNLGALLQTLPQGVQ-----------NHNLGSQDLNMDCGSSSKCNKVSL 86 
                     56789*********************************************9999987654...........444445555555544444444455 PP

           YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                     ++++++ +++ +p     ir PekrqrvPsaynrfikeei+r+ka+nPdishreafsaaakn  
  XP_010917940.1  87 MNSMENVQQQTLP-----IRLPEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNVV 145
                     5557777777777.....9*******************************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.3E-606143IPR006780YABBY protein
SuperFamilySSF470957.33E-699141IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSAHIATEQV CYVHCNFCNT ILVVSVPGSN SLTIVTVRCG HCANLLSVNL GALLQTLPQG  60
VQNHNLGSQD LNMDCGSSSK CNKVSLMNSM ENVQQQTLPI RLPEKRQRVP SAYNRFIKEE  120
IRRLKATNPD ISHREAFSAA AKNVVFLFLH QKSGHTFLIS NSGYPWMGIN NNSLARPLIA  180
CQEEAHGEQM VELNYMFIGI ISICVSVRSP CTYNDHI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019704397.11e-109protein YABBY 2 isoform X4
SwissprotQ10FZ78e-54YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2H3ZPG97e-93A0A2H3ZPG9_PHODC; protein YABBY 2-like isoform X4
STRINGXP_008790352.12e-89(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-50YABBY family protein