PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917943.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

YABBY

Protein Properties

Length: 163aa MW: 18001.5 Da PI: 8.5085

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917943.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	202	2.4e-62	3	155	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 + ++eqvCyv+CnfCntil+vsvP + ++++vtvrCGhC++llsvnl q+l+ + ++l++ ++l++ ++++ ++ XP_010917943.1 3 AHIATEQVCYVHCNFCNTILVVSVPGSNSLTIVTVRCGHCANLLSVNLGALLQTLPQGVQ---------NHNLGS--QDLNMDCGSSSKCNKVSL 86 56789*******************************************9999987664.........344555..455554444444444444 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++++ +++ +p + PekrqrvPsaynrfikeei+r+ka+nPdishreafsaaaknWahfP+i fgl XP_010917943.1 87 MNSMENVQQQTLP----IRSVPEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNWAHFPHIQFGL 155 4456666666666....6778************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.4E-69	6	155	IPR006780	YABBY protein
SuperFamily	SSF47095	5.63E-8	102	149	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.1E-5	104	149	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MSAHIATEQV CYVHCNFCNT ILVVSVPGSN SLTIVTVRCG HCANLLSVNL GALLQTLPQG 60 VQNHNLGSQD LNMDCGSSSK CNKVSLMNSM ENVQQQTLPI RSVPEKRQRV PSAYNRFIKE 120 EIRRLKATNP DISHREAFSA AAKNWAHFPH IQFGLSVDGD KQQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917943.1	1e-120	protein YABBY 2 isoform X7
Swissprot	Q10FZ7	1e-62	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A2H3XYA7	1e-111	A0A2H3XYA7_PHODC; protein YABBY 2-like isoform X3
STRING	XP_008790352.1	1e-110	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-63	YABBY family protein