PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917944.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

YABBY

Protein Properties

Length: 162aa MW: 17928.5 Da PI: 8.5085

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917944.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	205.1	2.6e-63	3	154	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 + ++eqvCyv+CnfCntil+vsvP + ++++vtvrCGhC++llsvnl q+l+ + +++ +++l++ ++++ ++ XP_010917944.1 3 AHIATEQVCYVHCNFCNTILVVSVPGSNSLTIVTVRCGHCANLLSVNLGALLQTLPQGVQ-----------NHNLGSQDLNMDCGSSSKCNKVSL 86 56789*******************************************9999987654...........444445555555544444444455 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++++ +++ +p ir PekrqrvPsaynrfikeei+r+ka+nPdishreafsaaaknWahfP+i fgl XP_010917944.1 87 MNSMENVQQQTLP-----IRLPEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNWAHFPHIQFGL 154 5557777777777.....9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.9E-70	6	154	IPR006780	YABBY protein
SuperFamily	SSF47095	3.01E-8	99	148	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.5E-5	101	148	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MSAHIATEQV CYVHCNFCNT ILVVSVPGSN SLTIVTVRCG HCANLLSVNL GALLQTLPQG 60 VQNHNLGSQD LNMDCGSSSK CNKVSLMNSM ENVQQQTLPI RLPEKRQRVP SAYNRFIKEE 120 IRRLKATNPD ISHREAFSAA AKNWAHFPHI QFGLSVDGDK QQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917944.1	1e-119	protein YABBY 2 isoform X8
Swissprot	Q10FZ7	3e-64	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A2H3ZPG9	1e-110	A0A2H3ZPG9_PHODC; protein YABBY 2-like isoform X4
STRING	XP_008790352.1	1e-107	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	7e-65	YABBY family protein