PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010918103.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 281aa MW: 30879.9 Da PI: 9.5451

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010918103.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+av++LGG+ekAtPk++l++m++kgLtl+h+kSHLQkYRl XP_010918103.1 27 KPRLRWTPDLHDRFVDAVAKLGGPEKATPKSVLRVMGMKGLTLYHLKSHLQKYRL 81 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.97	24	84	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-32	24	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.88E-16	27	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-24	27	82	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	29	80	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-24	122	169	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MERGYGSAYE AAAGGGGGGV VLSRDPKPRL RWTPDLHDRF VDAVAKLGGP EKATPKSVLR 60 VMGMKGLTLY HLKSHLQKYR LGKQSRKETG VESKKDGSNS SGITYSSATT GSLPRGNNAG 120 EMPLAEALKY QLEVQRKLHE QLEVQKKLQM RIEAQGKYLQ AILEKAQKSL SFDMNNSGSL 180 EATRAQLTDF NLALSGLMDN VNQVCEEKNE ELGQFIPQDN LKRAHSSGFQ LYQKQQEDGE 240 DIKLAPHGGS LLLDLNVKGN YELFGGPRGS ELDLRIHSPR G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-21	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-21	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-21	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	27	83	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-21	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-21	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-21	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-21	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-21	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-21	27	83	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010918102.1	0.0	myb family transcription factor PHL11
Refseq	XP_010918103.1	0.0	myb family transcription factor PHL11
Swissprot	C0SVS4	1e-73	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2H3YKB2	0.0	A0A2H3YKB2_PHODC; myb family transcription factor PHL11
STRING	XP_008800016.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	4e-74	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]