PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010918327.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 310aa MW: 34306.4 Da PI: 8.392

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010918327.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104	8.8e-33	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG+ekAtPk +l+lm+v gLt++hvkSHLQ+YR+ XP_010918327.1 19 PRLRWTPDLHHCFVHAIEKLGGQEKATPKLVLQLMNVRGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.069	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-31	15	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.47E-15	17	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-9	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGNCGRNGGV RQYIRSKVPR LRWTPDLHHC FVHAIEKLGG QEKATPKLVL QLMNVRGLTI 60 SHVKSHLQMY RSMRNDMGRQ ASESQARKHS CEANDGGADE QDDGSSSPPT KPTKEFQSQF 120 VYFPHPPLKR ARMETQATSK NLQCSQGTSE TVTFPYCFDD YMQAMAVGRG IKEEGLRWQK 180 DAVETGLLAD HHPSKLKVLG YMVEESGPLK TGKPSDQNLV SAGKLKSEGS YKNGCRSYVS 240 LSFKERSEER DEVDDCSLSL SLSLHPTQRS NTSSASESSG AISSRHFSEC SGYSEGPRIN 300 LDLSMSFSGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029119720.1	0.0	transcription repressor KAN1 isoform X1
TrEMBL	A0A3Q0ICF2	0.0	A0A3Q0ICF2_PHODC; myb family transcription factor PHL8 isoform X3
STRING	XP_008805079.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-33	G2-like family protein