PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918415.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 347aa    MW: 39045.9 Da    PI: 8.7205
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918415.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.8e-11204296292
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +k lt+ dv+++gr+++pk  ae+    ++++ ++tl + d  +g++W++k++++ + ++  yv++    ++ ++++L+  D ++++   +++ e
  XP_010918415.1 204 LKHLTKTDVSSTGRIIIPKGGAERGlpHLNNKDGMTLFMGDlFTGKVWTFKYRFWTNHNSriYVIE-RAGSYIRSHHLQKDDLFIIYK--DKDSE 295
                     58899*****************999**7778899*******8899*******99555555547766.899****************94..44443 PP

                     . CS
              B3  92 l 92 
                      
  XP_010918415.1 296 I 296
                     3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-18194303IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0017203305IPR003340B3 DNA binding domain
SuperFamilySSF1019361.83E-15203303IPR015300DNA-binding pseudobarrel domain
PfamPF023624.2E-8204299IPR003340B3 DNA binding domain
CDDcd100177.42E-14205303No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSPQSQSWTC STSLSPQQSK SPLVTLNLFP SPYPSSSTPT PDFFSSSHSL SSTRTPNIFS  60
PKPSSFTTSS SNASWVMASE NQKGDNDYLI RVKPIDYMIG ENSKIGSTYS QMLNLMPISL  120
GAESSSSNAA QKKLGGAYRI FHAEDEFLLS SSTNQVWCDR GPRCYSEVVS NDSQCTPFPA  180
SYELGNHQHP RQESEAKALK VVLLKHLTKT DVSSTGRIII PKGGAERGLP HLNNKDGMTL  240
FMGDLFTGKV WTFKYRFWTN HNSRIYVIER AGSYIRSHHL QKDDLFIIYK DKDSEIYYVA  300
FSKEIPPPKL IDDKQDNANN QQLFRGGNER ELRCQICHKP IVQYEAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-241972987108B3 domain-containing transcription factor LEC2
6j9c_D1e-241972987108B3 domain-containing transcription factor LEC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019705439.10.0uncharacterized protein LOC109504738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.14e-22B3 family protein