PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918529.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 179aa    MW: 20822.9 Da    PI: 10.0895
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918529.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34281192102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye++e +e  +++sw+e+g+ fvv+ ++ef++ +LpkyFkh nfaSF+RQLn+YgFkk+ +++         weF+h++F+kg+++ll +
  XP_010918529.1  28 FLSKTYELVEGSEAPHVVSWNEEGSGFVVWLPQEFSQFILPKYFKHCNFASFIRQLNTYGFKKSASDR---------WEFRHEKFQKGRRHLLAE 113
                     9***************************************************************9999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_010918529.1 114 ITRRKC 119
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-3621111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-3023117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-4724117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-162851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3028117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-166678IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-167991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEASRKTASA SNRPGRTPSM RARSLAPFLS KTYELVEGSE APHVVSWNEE GSGFVVWLPQ  60
EFSQFILPKY FKHCNFASFI RQLNTYGFKK SASDRWEFRH EKFQKGRRHL LAEITRRKCE  120
PSVFPSFLKA CEKCPPPVEN DLLEENKVLQ QKNAELLSQI KHYKALEGEL LKRLSQYVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-19261172104Putative transcription factor
5d5x_B1e-19261172104Putative transcription factor
5d5x_E1e-19261172104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918529.11e-131heat stress transcription factor B-4b-like
SwissprotQ963201e-38HSFB1_ARATH; Heat stress transcription factor B-1
TrEMBLA0A3Q0I5X61e-110A0A3Q0I5X6_PHODC; heat stress transcription factor B-4b-like
STRINGXP_010242971.11e-65(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.15e-41heat shock factor 4
Publications ? help Back to Top
  1. Weng M, et al.
    Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress in Arabidopsis thaliana.
    Plant Cell Environ., 2014. 37(9): p. 2128-38
    [PMID:24548003]
  2. Nagashima Y,Iwata Y,Ashida M,Mishiba K,Koizumi N
    Exogenous salicylic acid activates two signaling arms of the unfolded protein response in Arabidopsis.
    Plant Cell Physiol., 2014. 55(10): p. 1772-8
    [PMID:25138441]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hossain MA, et al.
    Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 650
    [PMID:27242851]
  5. Röth S,Mirus O,Bublak D,Scharf KD,Schleiff E
    DNA-binding and repressor function are prerequisites for the turnover of the tomato heat stress transcription factor HsfB1.
    Plant J., 2017. 89(1): p. 31-44
    [PMID:27560701]
  6. Xu G, et al.
    uORF-mediated translation allows engineered plant disease resistance without fitness costs.
    Nature, 2017. 545(7655): p. 491-494
    [PMID:28514448]