PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918530.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 300aa    MW: 34645.6 Da    PI: 6.2079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918530.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011160184123
                     EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                     + C  C+k ++  +++++H+++  H
  XP_010918530.1 160 FFCDLCNKQYKLAMEFESHLSSydH 184
                     67*****************987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004433.5E-1863108IPR000467G-patch domain
PROSITE profilePS5017416.68265110IPR000467G-patch domain
PfamPF015855.3E-1666106IPR000467G-patch domain
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEGKHYGGRQ EAYFQERQRD REEAYSNSLV EDSGEDFRLP IDHRPTENLD IENLEQASLD  60
TQLTSSNIGF RLLQKMGWKG KGLGKDEQGI IEPIKTGIRD SKLGVGKQEQ DDFFTAEENV  120
QRRKLDIELE ETEELVKKRE VLAEREQKIQ TEVKEIKKVF FCDLCNKQYK LAMEFESHLS  180
SYDHNHRKRF KEMREMHGSS SRDDRQKREQ LRQEKEMARF AQMADAHKQQ QQQQQEQLEV  240
SADTGAPKSA SRLLAPDQRQ ALKFGFSRPG ASKKTSTGGI SKKPKIAVSS IFGDDSDDEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918538.10.0G patch domain-containing protein 8
RefseqXP_029120455.10.0G patch domain-containing protein 8
RefseqXP_029120458.10.0G patch domain-containing protein 8
RefseqXP_029120459.10.0G patch domain-containing protein 8
TrEMBLA0A2H3ZZG10.0A0A2H3ZZG1_PHODC; G patch domain-containing protein 8
STRINGXP_008810389.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1017579