PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010918633.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 787aa MW: 85113.7 Da PI: 6.9608

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010918633.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92	7.5e-29	74	163	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YAk+vGF++r+s+ ++s+r+++i++r+ vCskeg+re + ++ e+++r+ra tr+gCka+++vkk+ +kw vtk+e+eHnH XP_010918633.1 74 FYAAYAKHVGFRIRISRYTRSRRDNSIISRRIVCSKEGFREARANEglsGERRQRQRAATRVGCKAMIMVKKMGPEKWIVTKFEKEHNHG 163 9*****************************************99998899999********************************5 PP
2	FAR1	88	1.4e-27	211	303	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GF+ r+sk +s+r+++i++r+ vCskeg+re + k+ + k +r+r+ tr+gCka++ vk+ ++gkw+vtk+e+eHnH+l XP_010918633.1 211 FYIAYASHMGFRARISKYCRSRRDNSIISRQIVCSKEGFREIRVKNeitdEGKIKRPRVITRIGCKAMIIVKRANSGKWVVTKFEKEHNHDLK 303 9****************************************9999998889999********************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-26	74	163	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.7E-25	211	302	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence Send to blast
MLRMEDELVK PCIYSEDGRT EVTIAPMDIE PFVDEQSKMM RNPDKGEIIA SGGDTDAEPY 60 EGMEFESEEA ARTFYAAYAK HVGFRIRISR YTRSRRDNSI ISRRIVCSKE GFREARANEG 120 LSGERRQRQR AATRVGCKAM IMVKKMGPEK WIVTKFEKEH NHGPVPPRKV EVRTVRRNDD 180 FLVQSYISDG GAVQEPFEGM EFESEEAAKT FYIAYASHMG FRARISKYCR SRRDNSIISR 240 QIVCSKEGFR EIRVKNEITD EGKIKRPRVI TRIGCKAMII VKRANSGKWV VTKFEKEHNH 300 DLKVPHLESH SNAGEVINLQ GAIIKPDEMV MDESSARTQG TGQESLTVLY NQLCCEAIKY 360 AQEGAATEDS YNVAMSALKE AVEKVAAAKK AAVNIGQQGL HIGGAKQAFL VVHPAQKKAL 420 KDLQCLNEVK QVPLILNIAN SQLLHNPSDG VHTANATQVL NITNAVSVLK QSLPSTPPTE 480 GLIGNGLEGS DLPAEKKMAV HTVDKDVELD PMIQKSQNLD STDAAKADST PRSGNNLTSP 540 GSSETQLVAI PAVPVTLYVP VMGSLPMSCS VGTPGTPGGS YALVAASIEA LPVSARPAGP 600 SSQLQDASFQ PAAAVASKSG VLALAPSTGN LSEHCKPYTG PNPQVHATAI ACGARVVPPK 660 AAASVIKAIE ARIRSGGASV AKSALTGGCK LLAAQSPCPC TIEDGKREHA SANVIPESQA 720 GSLEEMKGQK IEVGPEELMV DPDHSAVEND GQDGSLFERQ VELLGTVGVS DDLSMFEKRA 780 WTEIKCD

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence Send to blast

MLRMEDELVK PCIYSEDGRT EVTIAPMDIE PFVDEQSKMM RNPDKGEIIA SGGDTDAEPY  60
EGMEFESEEA ARTFYAAYAK HVGFRIRISR YTRSRRDNSI ISRRIVCSKE GFREARANEG  120
LSGERRQRQR AATRVGCKAM IMVKKMGPEK WIVTKFEKEH NHGPVPPRKV EVRTVRRNDD  180
FLVQSYISDG GAVQEPFEGM EFESEEAAKT FYIAYASHMG FRARISKYCR SRRDNSIISR  240
QIVCSKEGFR EIRVKNEITD EGKIKRPRVI TRIGCKAMII VKRANSGKWV VTKFEKEHNH  300
DLKVPHLESH SNAGEVINLQ GAIIKPDEMV MDESSARTQG TGQESLTVLY NQLCCEAIKY  360
AQEGAATEDS YNVAMSALKE AVEKVAAAKK AAVNIGQQGL HIGGAKQAFL VVHPAQKKAL  420
KDLQCLNEVK QVPLILNIAN SQLLHNPSDG VHTANATQVL NITNAVSVLK QSLPSTPPTE  480
GLIGNGLEGS DLPAEKKMAV HTVDKDVELD PMIQKSQNLD STDAAKADST PRSGNNLTSP  540
GSSETQLVAI PAVPVTLYVP VMGSLPMSCS VGTPGTPGGS YALVAASIEA LPVSARPAGP  600
SSQLQDASFQ PAAAVASKSG VLALAPSTGN LSEHCKPYTG PNPQVHATAI ACGARVVPPK  660
AAASVIKAIE ARIRSGGASV AKSALTGGCK LLAAQSPCPC TIEDGKREHA SANVIPESQA  720
GSLEEMKGQK IEVGPEELMV DPDHSAVEND GQDGSLFERQ VELLGTVGVS DDLSMFEKRA  780
WTEIKCD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010918633.1	0.0	uncharacterized protein LOC105042954
Refseq	XP_019705223.1	0.0	uncharacterized protein LOC105042954
TrEMBL	A0A2H3ZHL7	0.0	A0A2H3ZHL7_PHODC; uncharacterized protein LOC103696283
STRING	XP_008776072.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-27	FAR1 family protein