PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918667.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family E2F/DP
Protein Properties Length: 359aa    MW: 39241.8 Da    PI: 8.2607
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918667.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.91.5e-27105189271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse..................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                  d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_010918667.1 105 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnlaspdqqqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 189
                     689********...*****999*********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094047.4E-1321359IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.7E-46100194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-35104189IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.7E-25106189IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.89E-21107190IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.25E-42194297IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-41195314No hitNo description
SMARTSM011385.1E-74196357IPR014889Transcription factor DP, C-terminal
PfamPF087812.3E-42197331IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVTGVGNRQE EDGNKTAATL PKPPGGALSS WGTPAFSGGQ SASTSGSAGS PSSRSEPTAA  60
TPASESTFVR LNHLDIHGDD AGSSQGAVSG KKKKRGARTV GGDKSGRGLR QFSMKVCEKV  120
ESKGRTTYNE VADELVAEFA DPNNNLASPD QQQQQYDEKN IRRRVYDALN VLMAMDIISK  180
DKKEIQWKGL PRTSLNDIEE LKAERIGLKS RIEKKAAYLH ELQDQFVGLQ NLIQRNEQLY  240
KSGIAPSGGV ALPFILVKTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD SFVLKEMRFC  300
ERAQKDGAHD SSSNGGESSS TLSMYQHHVH QPVRPNSTHK LPTSPPIPGI LKARVKQEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-4198194193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918667.10.0LOW QUALITY PROTEIN: transcription factor-like protein DPB
SwissprotQ9FNY21e-150DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2H3Z7T50.0A0A2H3Z7T5_PHODC; LOW QUALITY PROTEIN: transcription factor-like protein DPB
STRINGXP_008809692.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-141Transcription factor DP